Special

MmuEX0022060 @ mm9

Exon Skipping

Gene
ENSMUSG00000036890 | Gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2444269]
Coordinates
chr2:44607567-44681063:-
Coord C1 exon
chr2:44680871-44681063
Coord A exon
chr2:44611788-44611955
Coord C2 exon
chr2:44607567-44607740
Length
168 bp
Sequences
Splice sites
3' ss Seq
AACCTTTATCTCTTCTCTAGGAC
3' ss Score
10.92
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTTTGAACAGGCCAATGAGTATTGTCATCATCGAGGCATTTTATGGAGGCTCCCATCGACAGCTGGTAGAGCTGCTCCGAGAAGAATTAGATGACTGCGTGTTGTACACTCTTCCTGCAAAGAAATGGCACTGGAGAGCACGCACAGCAGCCTTATACTTCTCACAGAATATTCCCAGCAGTGAGCACTACAG
Seq A exon
GACCCTCTTTGCAAGCTCAGTACTCAACCTGACTGAACTGGCTGCCCTTCGGCCTGATCTGGGAAAACTGAAAAAGATCTTATACTTCCATGAAAACCAGTTGGTGTATCCTGTCAAGAAATATCAGGAGAGAGATTTTCAATATGGATACAACCAAATTCTCTCGTG
Seq C2 exon
TTTGGTGGCTGATGTTGTGGTATTCAATTCCAGTTTTAATATGGAATCATTTCTTACTTCTATTGGAAAATTCCTGAAGCTGATTCCTGATCACAGGCCTAAGGATCTGGAAAGCATTATCAGACCCAAGTGTCAAGTTATTTATTTTCCCATCAGATTTCCTGATGTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036890-'8-18,'8-17,13-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF120383=DUF3524=PU(35.3=90.8)

							
A:
PF120383=DUF3524=PD(47.8=96.5)

							
C2:
PF120383=DUF3524=PD(30.5=86.4)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000038119





     
                   









    
Main Skipping Isoform:
ENSMUSP00000116839





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000038119f3583A, ENSMUSP00000108429, ENSMUSP00000119239, ENSMUSP00000119639, ENSMUSP00000120593
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr2:144145572-144145739 
HIGH PSI
HsaEX0028906
(GTDC1)
Human
(hg19)
chr2:144903139-144903306 
HIGH PSI
HsaEX0028906
(GTDC1)
Rat
(rn6)
chr3:29597192-29597359 
ALTERNATIVE
RnoEX0040379
(Gtdc1)
Cow
(bosTau6)
chr2:52661007-52661174 
HIGH PSI
BtaEX0016457
(GTDC1)
Chicken
(galGal4)
chr7:32700990-32701157 
ALTERNATIVE
GgaEX1027685
(GTDC1)
Chicken
(galGal3)
chr7:34820783-34820950 
ALTERNATIVE
GgaEX1027685
(GTDC1)
Zebrafish
(danRer10)
chr9:26057056-26057223 
HIGH PSI
DreEX6036473
(gtdc1)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCCCATCGACAGCTGGTAGAG

				
R: 
TCCAGATCCTTAGGCCTGTGA

				
Band lengths: 
254-422

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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