DreEX6036473 @ danRer10
Exon Skipping
Gene
ENSDARG00000020642 | gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050417-8]
Coordinates
chr9:26050274-26060367:+
Coord C1 exon
chr9:26050274-26050468
Coord A exon
chr9:26057056-26057223
Coord C2 exon
chr9:26060194-26060367
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGCTTTGTTTTACAGGGT
3' ss Score
11.31
5' ss Seq
ATGGTAACA
5' ss Score
4.87
Exon sequences
Seq C1 exon
TAAATAGCCTGCGTCCATGAGTGTGCTCTTGCTGGAGGCGTTCTATGGCGGCTCCCACAAACAGCTGCTTGATCTTCTCAAGGAAAGTGTTGAAGACTGTGTGAGCTTCACTCTGCCTGCGAAAAAATGGCACTGGAGAGCCAGAACCTCTGCTCTGTACTTCATGCAAGCAGTTCCAGCAAATTCCTCATACAG
Seq A exon
GGTTTTGTTCACCAGCTCCGTTCTCAATCTAGCCGAGCTTGTAGCTCTTCGTCCTGATCTTGGCCATCTTAAGAAGGTTCTCTACTTCCATGAGAACCAGCTGGTCTATCCAGTCCGCAAAAGCCAAGAAAGAGATTTCCAATATGGCTACAACCAGATCCTCTCATG
Seq C2 exon
CCTGGTTGCGGATGTGGTGGTGTTCAACTCCTCGTTTAACATGGAATCCTTTCTCTCGTCCATCTCCACCTTCATGAAGACCATGCCTGACCATCGGCCCAAAGATCTGGAGCGGCTCATCCGTCCCAAGTGTCACGTCCTCCACTTCCCCATTCGCTTTCCCGATGTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020642-'3-2,'3-1,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF120383=DUF3524=PU(35.3=98.3)
A:
PF120383=DUF3524=FE(33.5=100)
C2:
PF120383=DUF3524=PD(30.5=86.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCACAAACAGCTGCTTGA
R:
GATCTTTGGGCCGATGGTCAG
Band lengths:
251-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]