DreEX0036498 @ danRer10
Exon Skipping
Gene
ENSDARG00000020642 | gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050417-8]
Coordinates
chr9:26057056-26076445:+
Coord C1 exon
chr9:26057056-26057223
Coord A exon
chr9:26060194-26060367
Coord C2 exon
chr9:26076350-26076445
Length
174 bp
Sequences
Splice sites
3' ss Seq
AGGACTTTTTTTTCCCACAGCCT
3' ss Score
8.25
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GGTTTTGTTCACCAGCTCCGTTCTCAATCTAGCCGAGCTTGTAGCTCTTCGTCCTGATCTTGGCCATCTTAAGAAGGTTCTCTACTTCCATGAGAACCAGCTGGTCTATCCAGTCCGCAAAAGCCAAGAAAGAGATTTCCAATATGGCTACAACCAGATCCTCTCATG
Seq A exon
CCTGGTTGCGGATGTGGTGGTGTTCAACTCCTCGTTTAACATGGAATCCTTTCTCTCGTCCATCTCCACCTTCATGAAGACCATGCCTGACCATCGGCCCAAAGATCTGGAGCGGCTCATCCGTCCCAAGTGTCACGTCCTCCACTTCCCCATTCGCTTTCCCGATGTCACAAG
Seq C2 exon
ATTCCTCCCTGCACACAAGCGTCTCAGGCATCCAGTGCGGTGTGATGATATCCACGCTCCGGCTGCTAAAAGCCACATTCAGACATCAAGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020642_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.273
Domain overlap (PFAM):
C1:
PF120383=DUF3524=FE(33.5=100)
A:
PF120383=DUF3524=PD(30.5=86.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTCTCAATCTAGCCGAGC
R:
TGGACTTGATGTCTGAATGTGGC
Band lengths:
245-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]