MmuEX0022054 @ mm10
Exon Skipping
Gene
ENSMUSG00000036890 | Gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2444269]
Coordinates
chr2:44635002-44825543:-
Coord C1 exon
chr2:44825351-44825543
Coord A exon
chr2:44752047-44752220
Coord C2 exon
chr2:44635002-44635316
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATCGTCTTTTCTCTTTACAGTTT
3' ss Score
10.65
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTTTGAACAGGCCAATGAGTATTGTCATCATCGAGGCATTTTATGGAGGCTCCCATCGACAGCTGGTAGAGCTGCTCCGAGAAGAATTAGATGACTGCGTGTTGTACACTCTTCCTGCAAAGAAATGGCACTGGAGAGCACGCACAGCAGCCTTATACTTCTCACAGAATATTCCCAGCAGTGAGCACTACAG
Seq A exon
TTTGGTGGCTGATGTTGTGGTATTCAATTCCAGTTTTAATATGGAATCATTTCTTACTTCTATTGGAAAATTCCTGAAGCTGATTCCTGATCACAGGCCTAAGGATCTGGAAAGCATTATCAGACCCAAGTGTCAAGTTATTTATTTTCCCATCAGATTTCCTGATGTGAGCAG
Seq C2 exon
ATTCATGCCCAAGCACAAAATAGCCCACTTAAGGAGGATGCTCAGCCTTATTGGAGATGCTGCTGCATCTCAGTCTGTGGCGCCTTGTCCCCAGCCAGGGCAGAGGGTTTCTGAGAAGTCACCGGAGAACTGTGAATCAAAGTCTGATGAACACCCTGACCTTGATGCTGAACAAGAAGCCCTGGACAACCCATCAGTCCATAAATCAGGCTCTCTTCCTGTGAGTAAAGAAAACCTGCCTCTTGATCCCAGCACCCTTCTGTGTGGAGCTGAAGATCCGCAAAGACCGCTGCACATTACATGGCCGCACAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036890_MULTIEX3-3/6=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.534
Domain overlap (PFAM):
C1:
PF120383=DUF3524=PU(92.2=98.3)
A:
PF120383=DUF3524=PD(47.2=86.4)
C2:
PF120383=DUF3524=PD(31.0=25.5),PF136921=Glyco_trans_1_4=PU(11.9=9.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGAGCTGCTCCGAGAAGA
R:
CCGGTGACTTCTCAGAAACCC
Band lengths:
254-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types