RnoEX0040380 @ rn6
Exon Skipping
Gene
ENSRNOG00000031038 | Gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:RGD Symbol;Acc:1563393]
Coordinates
chr3:29470963-29660977:-
Coord C1 exon
chr3:29660785-29660977
Coord A exon
chr3:29590033-29590206
Coord C2 exon
chr3:29470963-29471277
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATTGTCTTTTCTCTTTACAGTTT
3' ss Score
11.15
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTTTGATCAAGCCAATGAGTATTCTTATCATTGAGGCATTTTATGGAGGCTCCCATCGACAGCTGGTAGAGCTGCTCCGAGAAGAAGTGGATGACTGTGTGCTGTACACCCTTCCTGCAAAGAAATGGCATTGGCGAGCACGCACAGCAGCGCTGTACTTCTCACAGAGTGTGCCCAGCAGTGAGCACTACAG
Seq A exon
TTTGGTGGCTGATGTTGTGGTATTCAATTCCAATTTTAATATGGAATCATTTCTTACTTCTATTGGAAAATTCCTGAAGCTGATTCCTGATCACAGGCCTAAGGATCTGGAAAGCATTATCAGACCCAAGTGTCAAGTAATTTACTTTCCCATCAGATTTCCTGATGTGAGCAG
Seq C2 exon
ATTCATGCCCAAGCACAAAATAGCCCACTTAAGGAGGATGCTCAGCCTTATTGGAAATGATGCTGCAGCGCTGTCTGTGACGCTTCCTCCCCAACCAGAGCAGAGGCTTTCTAAGAAGTCACTGGAGAATTTTGAATCAAAGTCTGATGAACACCCTGGCCTTGATACTGAACAAGAAACCCTGGACACCCCAACAATCCTCAAATCAGTCTCCCTTCCTGTGAGCGAAGAAAACCCGGCTCTTGGTCACAGCACCTTTTTGTGTGGAGCTGAAGATCAGCAGAGACCGCTGCACATTACATGGCCGCACAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031038-'12-32,'12-17,15-32
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.329
Domain overlap (PFAM):
C1:
PF120383=DUF3524=PU(95.2=98.3),PF120383=DUF3524=PU(1.9=1.7)
A:
PF120383=DUF3524=PD(3.2=3.4),PF120383=DUF3524=PD(96.2=86.4)
C2:
PF0053415=Glycos_transf_1=PU(7.8=11.3)
Main Skipping Isoform:
ENSRNOT00000059679fB6306
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAGAAATGGCATTGGCG
R:
TCAGTATCAAGGCCAGGGTGT
Band lengths:
249-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]