GgaEX0018815 @ galGal3
Exon Skipping
Gene
ENSGALG00000012438 | SBF1
Description
NA
Coordinates
chr1:456382-457723:+
Coord C1 exon
chr1:456382-456431
Coord A exon
chr1:457198-457290
Coord C2 exon
chr1:457623-457723
Length
93 bp
Sequences
Splice sites
3' ss Seq
ACGTTCTGTTGGTGCTGCAGATT
3' ss Score
8.1
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CGGGCGCAACACGCTCAGGGGCTTCACCTCTGCTCACATGAGCAGTGCAG
Seq A exon
ATTTCTCCGACAAGAGGCAGCCTAAGCTGGGATCGCTCATGAAGCAGGTGATGGGAGGGAAGGACGAAGGGCCCGGGACTATTAGCCGTGGAG
Seq C2 exon
GGCTGGGTCACAGAGCCAGGGTCATCACCCTGTCCACCCCCAAGTGCGTGTCGCCGAAGGGCCGCGAGTCGCCCCGAGGTAGGGTCCCGCCGGGCACTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012438-'30-40,'30-39,31-40
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.906 C2=0.556
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(4.0=100)
A:
PF066029=Myotub-related=FE(6.8=100)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACACGCTCAGGGGCTTC
R:
CCTACCTCGGGGCGACTC
Band lengths:
127-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]