GgaEX0018817 @ galGal3
Exon Skipping
Gene
ENSGALG00000012438 | SBF1
Description
NA
Coordinates
chr1:457198-458327:+
Coord C1 exon
chr1:457198-457290
Coord A exon
chr1:457623-457700
Coord C2 exon
chr1:458143-458327
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTTTCATCCTGTGCCCCCAGGGC
3' ss Score
11.29
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATTTCTCCGACAAGAGGCAGCCTAAGCTGGGATCGCTCATGAAGCAGGTGATGGGAGGGAAGGACGAAGGGCCCGGGACTATTAGCCGTGGAG
Seq A exon
GGCTGGGTCACAGAGCCAGGGTCATCACCCTGTCCACCCCCAAGTGCGTGTCGCCGAAGGGCCGCGAGTCGCCCCGAG
Seq C2 exon
GCAAATGGGGCAGCATCCGTGCCAGCGGGCGCATGAGCAGCTATGCCCTGAATGTGGAGATTGGCTCACGGCTGGCTGGGAAGGACCTGCTGGGTGCCCAGCACAACGGTGCGCCCGCCGAGGCCAGCTTCCTGCGTCAGCACCGCGCCTCGCTCTACATCATTGGGGACAAGTCACAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012438_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.906 A=0.556 C2=0.056
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(6.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCTCCGACAAGAGGCAGC
R:
CAGCCGTGAGCCAATCTCC
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]