BtaEX0031421 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021337 | SBF1
Description
SET binding factor 1 [Source:HGNC Symbol;Acc:HGNC:10542]
Coordinates
chr5:119973215-119976341:-
Coord C1 exon
chr5:119976204-119976341
Coord A exon
chr5:119973649-119973726
Coord C2 exon
chr5:119973215-119973387
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGCTGTACCCCCAGTGC
3' ss Score
8.69
5' ss Seq
GAGGTACCG
5' ss Score
8.5
Exon sequences
Seq C1 exon
GCCAGTCCCAGGCCGACTCCAGCAGCCTGGAACAGGAGAAGTACCTGCAGGCTGTAGTCAGCTCCATGCCGCGTTACGCGGATGCATCCGGCCGCAACACGCTCAGCGGCTTCTCCTCCGCCCACATGGGCAGCCATG
Seq A exon
TGCCCAGCCCCAGAGCCAGGGTCACCACGCTGTCCAACCCCATGGCGGCCTCGGCCTCCAGACGGACTGCGCCCCGAG
Seq C2 exon
GTAAATGGGGCAGCGTCCGGGCCAGTGGGCGCAGTGGTGGGCTCAGCACTGATGTGGGCTCCCGGCTAGCCGGCGTGGGCCCCCCCCAGGCCAACGGGGCCCCTCCTGAGCCAGGCTTTCTGCGGCCGCAGCGTGCAGCCCTCTATATCATTGGAGACAAAGCCCAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021337_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.383 A=1.000 C2=0.621
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.6=100)
A:
PF066029=Myotub-related=FE(5.7=100)
C2:
PF066029=Myotub-related=FE(13.2=100)
Main Inclusion Isoform:
ENSBTAT00000028448fB6136
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGAAGTACCTGCAGGCT
R:
GAGCCCACATCAGTGCTGAG
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development