GgaEX1050910 @ galGal4
Exon Skipping
Gene
ENSGALG00000012438 | SBF1
Description
SET binding factor 1 [Source:HGNC Symbol;Acc:HGNC:10542]
Coordinates
chr1:539908-541898:-
Coord C1 exon
chr1:541761-541898
Coord A exon
chr1:540535-540612
Coord C2 exon
chr1:539908-540092
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTTTCATCCTGTGCCCCCAGGGC
3' ss Score
11.29
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GCCCCTCGCAGACGGACTCCACCAGTTTGGAGCAGGAGAAATACCTGCAGGCTGTCATCAACTCCATGCCCCACTACGCCGACGCCGGCGGGCGCAACACGCTCAGCGGCTTCACCTCTGCTCACATGAGCAGTGCAG
Seq A exon
GGCTGGGTCACAGAGCCAGGGTCATCACCCTGTCCACCCCCAAGTGCGTGTCGCCGAAGGGCCGCGAGTCGCCCCGAG
Seq C2 exon
GCAAATGGGGCAGCATCCGTGCCAGCGGGCGCATGAGCAGCTATGCCCTGAATGTGGAGATTGGCTCACGGCTGGCTGGGAAGGACCTGCTGGGTGCCCAGCACAACGGTGCGCCCGCCGAGGCCAGCTTCCTGCGTCAGCACCGCGCCTCGCTCTACATCATTGGGGACAAGTCACAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012438_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.489 A=0.741 C2=0.129
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGCAGGCTGTCATCAAC
R:
CCGTGAGCCAATCTCCACATT
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]