MmuEX0041054 @ mm10
Exon Skipping
Gene
ENSMUSG00000036529 | Sbf1
Description
SET binding factor 1 [Source:MGI Symbol;Acc:MGI:1925230]
Coordinates
chr15:89295395-89299620:-
Coord C1 exon
chr15:89299483-89299620
Coord A exon
chr15:89295952-89296029
Coord C2 exon
chr15:89295395-89295576
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGCTGTGCCCTCAGTGC
3' ss Score
9.47
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GCCAGGCCCAGGCCGACTCCAGCAGCCTGGAGCAAGAGAAGTACCTGCAGGCTGTGGTCAGCTCCATGCCACGTTATGCTGACTCATCAGGACGAAACACACTGAGTAGCTTCTCCTCAGCCCACATGGGTGGCCATG
Seq A exon
TGCCCAGCCCCCGAGCCAGGGTCACCACGCTGTCCAACCCTTTGGCGGCCTCGGCCTCCAGATGGACTGCGTCCCGAG
Seq C2 exon
GGAAATGGAGCAGTGTCCGAGCCAGTGGTCGAAGCAGTGGTCTTGGTTCTGATGTGGGCTCTCGGCTAGCTGGCAGAGATCTCCTCAGTACTCCCCACACCAACGGAGCTCCACCTGATTCTGGTTTTCTACGGCCACAGCGTGCAGCCCTCTACATCATTGGTGACAAAGCTCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036529_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=0.444 C2=0.492
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.6=100)
A:
PF066029=Myotub-related=FE(5.6=100)
C2:
PF066029=Myotub-related=FE(13.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGCCACGTTATGCTGAC
R:
TTGGTGTGGGGAGTACTGAGG
Band lengths:
179-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types