MmuINT0139005 @ mm10
Intron Retention
Gene
ENSMUSG00000036529 | Sbf1
Description
SET binding factor 1 [Source:MGI Symbol;Acc:MGI:1925230]
Coordinates
chr15:89295395-89299620:-
Coord C1 exon
chr15:89299483-89299620
Coord A exon
chr15:89295577-89299482
Coord C2 exon
chr15:89295395-89295576
Length
3906 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
ACTGGGTGTCTCCTTTGCAGGGA
3' ss Score
10.32
Exon sequences
Seq C1 exon
GCCAGGCCCAGGCCGACTCCAGCAGCCTGGAGCAAGAGAAGTACCTGCAGGCTGTGGTCAGCTCCATGCCACGTTATGCTGACTCATCAGGACGAAACACACTGAGTAGCTTCTCCTCAGCCCACATGGGTGGCCATG
Seq A exon
GTGAGAGGGGCTCCTGAGTAATGGTGGCCACAGAGCAAAGAGTACTTTGTGGGGCTGTGGCAGAATTTATGCTGGGCTGACCAGCAGGGGCAGAAGTGGCTTGACTGTGGTGTTGGGTATGGGACAAAGAGAGGGACTCCTCTCCCGAGTTCTGGGACAGGGCAGGAACACTGCTCAGACCAGGTGAGTGTCCTGAGGCCCTCACTCCTTTGACCATAAACCTGACCATTTCCTCGCCTTCCGTAAACCAGCACATCTGCCAGAGGCCTCTCAGTCCAGCAGATGGATGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGCCCAACAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGCCCAACAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTCGGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGCCCAACAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGCCCAACAGATGGGTGCTCTGTCCATCCCTCTAGCCCAACAGATGGGTGCTCTGTCCATCCCTCTCGGTCCAGCAGATGGGTGCTCTGTTTATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGCCCAACAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTCGGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGTCCAACAGATGGGTGCTCTGTCCATCCCTTGCTGTGTTTGCTGATGGAACATCCTTAAACTCATTTTCTCATCTTTTCTCTAGCCTGTCTACTTCCAGCTGCCACTCTGCCCATTAGTGGGCCTTCATACTCTTCTGTCCTGGCTTTGGGTTTGTCTGCACTGTTCTTGCTGCCCTTGTCATTCCCTGTGCATACCTCCATTGCACCTGAAATCACTAAGAGGCGCCAGGCCAACCTTCCCATGCTGACTTCTGCCTGTGAGGTGTGCGCGGACACAGTTCTCTGCCTGAGAACTGCTATTATCATAATTGTGTGCAGTGTCTTCTGTCCTTATGCATTGGGTCTGTTGTCTGAGGAGGCCCAGAGATGAGGTATCTGCCTCTGGCTGTGAGTTTAGCCCTTCTTTTGCTGCCTGGCATTTGCTTCCCCAATCTAGCCGTGGGCTGGACTGTTAATAGTTGGTCTAGATGACAGTGCTAAAAGAGGGGCATCCTGGGTACGCTCTGGACACTCTCTGTGAAGGCAAATAGCCTGGTTAGCAAATGAAGTGTGAGTTATGGGCACTGCTCTGGCCTCCTTCTCCCGGCTTGACTGCTAGATGCTGGGATCTCTGGCTGATTCTTTGGCTTACAACTCTAGCCACTGACTTGCATACCAAGCCCTGTGCTTGGAAATCTGTCTCAGCATTTGGTGTGGCATCTGCCATAGACTGCAGAGCCCATTTTTACCAAGCTGGTGTCACACTGTCACTTGGGAGTAAGTTGCCCCAGTCCATCTTGTGTGCTCAAAACCTCTGGTTCCCCCATTCCCCTCTTGAAGTTGTAGGGCTACATTTTCTCTTCTGGTCTTGGATCCTGAAAGTATAATGGCACTGGTGGCTTTTAGGCTGGTGGTAGTTCCCACGAGAGCAGCCATCTTGTAGGCCAGGGTTCTTAAGTCTGTCTGTCTTGTTCCTATGGTTGATTGTTCTTTCTTATAGTTTTTTCAAGATACGGTTTCTCCCTGTAGCCCTGGCTGTTCTGTAAATTGCTTTATAGATCAGGCTGGCCTCAAACTCATAGAGGTTCATCTGCCTCTGCCTCCTGAGTGCTGTGATTAAAGGCATACGCCACCACACCAAGCCAGATATGTTCTTTTTTGTTTGTTTGTTTGTTTTTTGTTTGGTTTGTTTGTTTGTTTACAGGGTTTCTCTGTATAGTCTTGGCTGTCCTGGAACTTACTCTGTAGGCCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTACCACCACTGCCCAGTGCCAGATCTGTTCTTGCTAGTAGCTTTCTGCCCTTCCTTTTTTCTGTACCTACTTACTCTACCCCAGGCTTCTTCACTCCCTGTTGAACTTGTAGTTCTCATTTGTATTTACCAGTGCTTATCAGTGATCTTCATCTCTTGTTAACACTTGCTGGCCACTGGTGCTGAGGACAGGCAGCAAGTCTGCTCTCATGATCACCAAGTGATACTAGTCTGATGGATAGGCCAGGCTGACCAATTGCCATTTTTCCCTGAGAGTACCTGCTTTTTGTGTGATTAAATGTATTTTATAGTCTGATTTTTCTGCCAGAAATTCTGAGTGGCACCCTCAGGCAGCAGCCTCCCCTCCGAGTGTGTGTGCTTTCACCTTCCCTAATGTCTTCTGGACAGATCTGTAAACCTTCTCCAGTGCAAATGTTGCTACCTCTGGTGTTATAAATTCAGGGTGTAGGGCCACCCTCCCTGACTGTCCAGTGATGATCTGGAGTCTGGCTTCCTTCAGCTCTACTTGGATTTCCAGCTGCAGCCTAAATAGGCGGATACTGTCTGCACTCCAAGTTGGCTAACTGCCATCTGTAATGTGGGGTTGTCAGAGAAGTCAGGGTGTGGAAGACTGGCCTTGAGCTTGGCCATAGCTGGGTGGGGTGATGTTTTGCACCATGCCTTTTTCTGTGTCCTGTATGAGGGAGGCCTCTGCACAGTCAGGTAAACTTGAGGTGTGTGTGACTCAGGCTTCTCCCAGATACATTGTCCCAGCCCATAACTCTGCCTGGTGCAGTCCTAGGACTCAGATCTGCTCATGTCCTCGATTGAACTGTCACCCCACTCCTCCCTCCAGCTCTTCTTTCTCCCTCTTCCAGTTGCCTCTAGGTCTCCTCCAAGACTGAGGCTCTCAGGTACCTGTGCTTTGTTGTGGACAAGGCTACTACATGGTTGTGTGTTGAATATTCTTGGAATTGTCCAGCAGTCAGACCCTAGCTTACTATAAAGGAGGTCTAAGAGAAACTTGAAGACAAGATTTCTCTGAGATGTTTGAAGAAGAGCCCCACTATTCCAAAGTCTGACCTTTCCCAGTATCATAGAACCTCTATACCTAGTTACCCCTGGTGGAGAGGACCCATACCTGGACCAGACAAGGGCCCATCCTGTTTCTGACCCCTGGGAGTGGGGCTTGGTGGGAACCTTTGACAATCCAGGCCTGGAACCAAATCTGAGCCTTCTCTCTGCTGTGCCCTCAGTGCCCAGCCCCCGAGCCAGGGTCACCACGCTGTCCAACCCTTTGGCGGCCTCGGCCTCCAGATGGACTGCGTCCCGAGGTACTGTACTGGGGCTTTCCCCTTAACTGGAACTGATGGCCCCCTAGTATGAGTCAAGCCATCTTTGGCACTAATATCTCTTTTCACACCCAGCACTAACTGCCCCTATGTGACAGACTAGCACAACTGACTCCTCCTAGCCCTAGTTACTTATCTGCCCAGCACCTGGTCCCGATCTAGACACTAACACAGGCCACCCCCCACCCCCATGTGCCTCAGCATTTGTGTGTTCCAGCCCTCCTCCCTCTTGTGGCCTGCCGACCACTCTGCCCTGCCTGGAAACTCAGTTCCCCTCCCTGGAGGCCAGGCCCAGCCAGCCCCAGGTAAGTGATGCTCTGACCTCAATCTAGCACTTACTGGGTGTCTCCTTTGCAG
Seq C2 exon
GGAAATGGAGCAGTGTCCGAGCCAGTGGTCGAAGCAGTGGTCTTGGTTCTGATGTGGGCTCTCGGCTAGCTGGCAGAGATCTCCTCAGTACTCCCCACACCAACGGAGCTCCACCTGATTCTGGTTTTCTACGGCCACAGCGTGCAGCCCTCTACATCATTGGTGACAAAGCTCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036529:ENSMUST00000123791:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=NA C2=0.492
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.6=100)
A:
NA
C2:
PF066029=Myotub-related=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types