MmuINT0139005 @ mm9
Intron Retention
Gene
ENSMUSG00000036529 | Sbf1
Description
SET binding factor 1 [Source:MGI Symbol;Acc:MGI:1925230]
Coordinates
chr15:89125826-89130051:-
Coord C1 exon
chr15:89129914-89130051
Coord A exon
chr15:89126008-89129913
Coord C2 exon
chr15:89125826-89126007
Length
3906 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
ACTGGGTGTCTCCTTTGCAGGGA
3' ss Score
10.32
Exon sequences
Seq C1 exon
GCCAGGCCCAGGCCGACTCCAGCAGCCTGGAGCAAGAGAAGTACCTGCAGGCTGTGGTCAGCTCCATGCCACGTTATGCTGACTCATCAGGACGAAACACACTGAGTAGCTTCTCCTCAGCCCACATGGGTGGCCATG
Seq A exon
GTGAGAGGGGCTCCTGAGTAATGGTGGCCACAGAGCAAAGAGTACTTTGTGGGGCTGTGGCAGAATTTATGCTGGGCTGACCAGCAGGGGCAGAAGTGGCTTGACTGTGGTGTTGGGTATGGGACAAAGAGAGGGACTCCTCTCCCGAGTTCTGGGACAGGGCAGGAACACTGCTCAGACCAGGTGAGTGTCCTGAGGCCCTCACTCCTTTGACCATAAACCTGACCATTTCCTCGCCTTCCGTAAACCAGCACATCTGCCAGAGGCCTCTCAGTCCAGCAGATGGATGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGCCCAACAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGCCCAACAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTCGGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGCCCAACAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGCCCAACAGATGGGTGCTCTGTCCATCCCTCTAGCCCAACAGATGGGTGCTCTGTCCATCCCTCTCGGTCCAGCAGATGGGTGCTCTGTTTATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGCCCAACAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTCGGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGTCCAACAGATGGGTGCTCTGTCCATCCCTTGCTGTGTTTGCTGATGGAACATCCTTAAACTCATTTTCTCATCTTTTCTCTAGCCTGTCTACTTCCAGCTGCCACTCTGCCCATTAGTGGGCCTTCATACTCTTCTGTCCTGGCTTTGGGTTTGTCTGCACTGTTCTTGCTGCCCTTGTCATTCCCTGTGCATACCTCCATTGCACCTGAAATCACTAAGAGGCGCCAGGCCAACCTTCCCATGCTGACTTCTGCCTGTGAGGTGTGCGCGGACACAGTTCTCTGCCTGAGAACTGCTATTATCATAATTGTGTGCAGTGTCTTCTGTCCTTATGCATTGGGTCTGTTGTCTGAGGAGGCCCAGAGATGAGGTATCTGCCTCTGGCTGTGAGTTTAGCCCTTCTTTTGCTGCCTGGCATTTGCTTCCCCAATCTAGCCGTGGGCTGGACTGTTAATAGTTGGTCTAGATGACAGTGCTAAAAGAGGGGCATCCTGGGTACGCTCTGGACACTCTCTGTGAAGGCAAATAGCCTGGTTAGCAAATGAAGTGTGAGTTATGGGCACTGCTCTGGCCTCCTTCTCCCGGCTTGACTGCTAGATGCTGGGATCTCTGGCTGATTCTTTGGCTTACAACTCTAGCCACTGACTTGCATACCAAGCCCTGTGCTTGGAAATCTGTCTCAGCATTTGGTGTGGCATCTGCCATAGACTGCAGAGCCCATTTTTACCAAGCTGGTGTCACACTGTCACTTGGGAGTAAGTTGCCCCAGTCCATCTTGTGTGCTCAAAACCTCTGGTTCCCCCATTCCCCTCTTGAAGTTGTAGGGCTACATTTTCTCTTCTGGTCTTGGATCCTGAAAGTATAATGGCACTGGTGGCTTTTAGGCTGGTGGTAGTTCCCACGAGAGCAGCCATCTTGTAGGCCAGGGTTCTTAAGTCTGTCTGTCTTGTTCCTATGGTTGATTGTTCTTTCTTATAGTTTTTTCAAGATACGGTTTCTCCCTGTAGCCCTGGCTGTTCTGTAAATTGCTTTATAGATCAGGCTGGCCTCAAACTCATAGAGGTTCATCTGCCTCTGCCTCCTGAGTGCTGTGATTAAAGGCATACGCCACCACACCAAGCCAGATATGTTCTTTTTTGTTTGTTTGTTTGTTTTTTGTTTGGTTTGTTTGTTTGTTTACAGGGTTTCTCTGTATAGTCTTGGCTGTCCTGGAACTTACTCTGTAGGCCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTACCACCACTGCCCAGTGCCAGATCTGTTCTTGCTAGTAGCTTTCTGCCCTTCCTTTTTTCTGTACCTACTTACTCTACCCCAGGCTTCTTCACTCCCTGTTGAACTTGTAGTTCTCATTTGTATTTACCAGTGCTTATCAGTGATCTTCATCTCTTGTTAACACTTGCTGGCCACTGGTGCTGAGGACAGGCAGCAAGTCTGCTCTCATGATCACCAAGTGATACTAGTCTGATGGATAGGCCAGGCTGACCAATTGCCATTTTTCCCTGAGAGTACCTGCTTTTTGTGTGATTAAATGTATTTTATAGTCTGATTTTTCTGCCAGAAATTCTGAGTGGCACCCTCAGGCAGCAGCCTCCCCTCCGAGTGTGTGTGCTTTCACCTTCCCTAATGTCTTCTGGACAGATCTGTAAACCTTCTCCAGTGCAAATGTTGCTACCTCTGGTGTTATAAATTCAGGGTGTAGGGCCACCCTCCCTGACTGTCCAGTGATGATCTGGAGTCTGGCTTCCTTCAGCTCTACTTGGATTTCCAGCTGCAGCCTAAATAGGCGGATACTGTCTGCACTCCAAGTTGGCTAACTGCCATCTGTAATGTGGGGTTGTCAGAGAAGTCAGGGTGTGGAAGACTGGCCTTGAGCTTGGCCATAGCTGGGTGGGGTGATGTTTTGCACCATGCCTTTTTCTGTGTCCTGTATGAGGGAGGCCTCTGCACAGTCAGGTAAACTTGAGGTGTGTGTGACTCAGGCTTCTCCCAGATACATTGTCCCAGCCCATAACTCTGCCTGGTGCAGTCCTAGGACTCAGATCTGCTCATGTCCTCGATTGAACTGTCACCCCACTCCTCCCTCCAGCTCTTCTTTCTCCCTCTTCCAGTTGCCTCTAGGTCTCCTCCAAGACTGAGGCTCTCAGGTACCTGTGCTTTGTTGTGGACAAGGCTACTACATGGTTGTGTGTTGAATATTCTTGGAATTGTCCAGCAGTCAGACCCTAGCTTACTATAAAGGAGGTCTAAGAGAAACTTGAAGACAAGATTTCTCTGAGATGTTTGAAGAAGAGCCCCACTATTCCAAAGTCTGACCTTTCCCAGTATCATAGAACCTCTATACCTAGTTACCCCTGGTGGAGAGGACCCATACCTGGACCAGACAAGGGCCCATCCTGTTTCTGACCCCTGGGAGTGGGGCTTGGTGGGAACCTTTGACAATCCAGGCCTGGAACCAAATCTGAGCCTTCTCTCTGCTGTGCCCTCAGTGCCCAGCCCCCGAGCCAGGGTCACCACGCTGTCCAACCCTTTGGCGGCCTCGGCCTCCAGATGGACTGCGTCCCGAGGTACTGTACTGGGGCTTTCCCCTTAACTGGAACTGATGGCCCCCTAGTATGAGTCAAGCCATCTTTGGCACTAATATCTCTTTTCACACCCAGCACTAACTGCCCCTATGTGACAGACTAGCACAACTGACTCCTCCTAGCCCTAGTTACTTATCTGCCCAGCACCTGGTCCCGATCTAGACACTAACACAGGCCACCCCCCACCCCCATGTGCCTCAGCATTTGTGTGTTCCAGCCCTCCTCCCTCTTGTGGCCTGCCGACCACTCTGCCCTGCCTGGAAACTCAGTTCCCCTCCCTGGAGGCCAGGCCCAGCCAGCCCCAGGTAAGTGATGCTCTGACCTCAATCTAGCACTTACTGGGTGTCTCCTTTGCAG
Seq C2 exon
GGAAATGGAGCAGTGTCCGAGCCAGTGGTCGAAGCAGTGGTCTTGGTTCTGATGTGGGCTCTCGGCTAGCTGGCAGAGATCTCCTCAGTACTCCCCACACCAACGGAGCTCCACCTGATTCTGGTTTTCTACGGCCACAGCGTGCAGCCCTCTACATCATTGGTGACAAAGCTCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036529-Sbf1:NM_001081030:28
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.376 A=NA C2=0.481
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.6=100)
A:
NA
C2:
PF066029=Myotub-related=FE(13.8=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: