RnoINT0130893 @ rn6
Intron Retention
Gene
ENSRNOG00000008392 | Sbf1
Description
SET binding factor 1 [Source:RGD Symbol;Acc:1307090]
Coordinates
chr7:130269172-130269799:-
Coord C1 exon
chr7:130269722-130269799
Coord A exon
chr7:130269354-130269721
Coord C2 exon
chr7:130269172-130269353
Length
368 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCG
5' ss Score
8.5
3' ss Seq
ACTGGGTGTCTCCTTTGCAGGTA
3' ss Score
11.28
Exon sequences
Seq C1 exon
TGCCCAGTCCCCGAGCCAGGGTCACCACGCTGTCCAACCCTTTGGCGGCCTCGGCCTCCAGATGGACTGCGTCCCGAG
Seq A exon
GTACCGTACTGGGGCTCTCCCCTTAACTGGAACTGATGGCCCCTTAGTATGAGTCAAGCTGTCTTGGGCACTAATATCTTCTTCCACACCCAGTACTAACTGCCCCTTTGTGACAGACTAGCACAATTGACTCCTCCTAGCCCCAGTTACTTGCCTGCCTAGCACTTGATCCCAACCCAGGCACTAACACAGGCCACCCCCCACGTGCTGAGGCATTTGTGTGTTCCAGCCCTCCTCCCTCTTGTGGCCTGCCGACCACTCTGCCCTGCCTGGAAACTCAGTCCCCTCCCTGGAGGCCAGGCCCAGCCAGCCCCAGGTAAGTGGTGCTCTGACCTCAATCTAGTGCTTACTGGGTGTCTCCTTTGCAG
Seq C2 exon
GTAAGTGGAGCAGTGTCCGAGCCAGTGGTCGAAGCAGTGGGCTTGGTGCTGATGTGGGCTCTCGGCTGGCTGGCAGAGACCTCCTCAGTACTCCCCACACCAACGGAGCGCCACCTGATTCTGGTTTTCTGCGGCCGCAGCGTGCAGCCCTCTACATCATTGGTGACAAAGCTCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008392:ENSRNOT00000072955:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.475
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(5.6=100)
A:
NA
C2:
PF066029=Myotub-related=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGCCAGGGTCACCAC
R:
TGAGCTGAGCTTTGTCACCAA
Band lengths:
248-616
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]