RnoEX0078151 @ rn6
Exon Skipping
Gene
ENSRNOG00000008392 | Sbf1
Description
SET binding factor 1 [Source:RGD Symbol;Acc:1307090]
Coordinates
chr7:130269172-130272635:-
Coord C1 exon
chr7:130272498-130272635
Coord A exon
chr7:130269722-130269799
Coord C2 exon
chr7:130269172-130269353
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGCTGTGCCCTCAGTGC
3' ss Score
9.47
5' ss Seq
GAGGTACCG
5' ss Score
8.5
Exon sequences
Seq C1 exon
GCCAGGCCCAGGCTGACTCCAGCAGCCTAGAGCAAGAGAAGTACCTGCAGGCTGTGGTTAGCTCCATGCCACGTTATGCTGACTCATCAGGACGAAACACACTTAGTAGCTTCTCCTCAGCCCACATGGGTGGTCACG
Seq A exon
TGCCCAGTCCCCGAGCCAGGGTCACCACGCTGTCCAACCCTTTGGCGGCCTCGGCCTCCAGATGGACTGCGTCCCGAG
Seq C2 exon
GTAAGTGGAGCAGTGTCCGAGCCAGTGGTCGAAGCAGTGGGCTTGGTGCTGATGTGGGCTCTCGGCTGGCTGGCAGAGACCTCCTCAGTACTCCCCACACCAACGGAGCGCCACCTGATTCTGGTTTTCTGCGGCCGCAGCGTGCAGCCCTCTACATCATTGGTGACAAAGCTCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008392_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=0.444 C2=0.475
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.0=100)
A:
PF066029=Myotub-related=FE(5.6=100)
C2:
PF066029=Myotub-related=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGCCACGTTATGCTGAC
R:
GTGGGGAGTACTGAGGAGGTC
Band lengths:
174-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]