RnoINT0130892 @ rn6
Intron Retention
Gene
ENSRNOG00000008392 | Sbf1
Description
SET binding factor 1 [Source:RGD Symbol;Acc:1307090]
Coordinates
chr7:130269722-130272635:-
Coord C1 exon
chr7:130272498-130272635
Coord A exon
chr7:130269800-130272497
Coord C2 exon
chr7:130269722-130269799
Length
2698 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
TCTCTCTGCTGTGCCCTCAGTGC
3' ss Score
9.47
Exon sequences
Seq C1 exon
GCCAGGCCCAGGCTGACTCCAGCAGCCTAGAGCAAGAGAAGTACCTGCAGGCTGTGGTTAGCTCCATGCCACGTTATGCTGACTCATCAGGACGAAACACACTTAGTAGCTTCTCCTCAGCCCACATGGGTGGTCACG
Seq A exon
GTGAGAGGGTGCTTTTGGGTAAATGGTGGACATAGAGCAAAGAGGTCTTTGTGGGGCTATGGCAGAATTTATGCTGGGTCGGCCAGCAGGGGGCAGAAGTAGCTTGACTGTGGTGTTGGGTTTGGGACAAAGAGGGGGACTTTTCTGAGTTCTGGGACAGAGCAGGAGTACTGCTCGGACCAGGTGAGTGTCCTGAGGCCCTGTCTCCTCTGACCATAACCCTGACCATTTCCTCACCTTCCTTAACCCAGCACATCCACCAGAGAAGCCTCTAGGTCCAACAGATGCTCCATCCCTCTGTTTGCTGATGCCTAAAGCCCCTGGAACATCCTTAAACTCATTTTCCCACTTCCTTTATGCTGTCTACTTCAGCTGCCACTTTTCCCACAGTGACCTTCATCTTCTTCTGTCCTGGCTCTCTGGGTTTTGTCTGCACTGTTCTTGCTGTCCTTGTCACCCCCTACGCACACCTCCATAGCACCAACCTGCTTCCTTCCCATGCTGACTTCTGCCTGTGAGGCGTAGAGAGAACTGCTGTCATCATAATTGTGTGCAGTATCTCCTGTCCTTACGCACTGGGCATTGTGTCTGAAGGAGGCCCAGAGATCAGGTGTGTGCCTCTGGCTATGAGGTTAGCCCCCTCTCTTGCTGCCTGGCACCCGCTGCCCAGTTCTAGCTGTGGGCTGGACTGTTTTCACAGTTGGTCTAGATGGCAGTACTAACGGAGGGGTGCCTTGTGTATGCTCTGGACACTGTCTAGCTGTGAGGCAAACTGCCTGGCTAGCAAATGAAGTGGGGTATGGGCACTGCTCTTGTCTGCCTCATTCTCATGGCCTGACTGGTTGGTGCTGGGATCTTTAGCAGTTGATTCTTCGACTTACAACTTCAGCCACTCACTTGCATACCGAGCCCAATGTGTGTCAGTCGAGGTCCTTGTACTTGGAAATCTGTCTGAGCATTAGGTGTGGCATCTGCCAAAGACTACAGAGCCCATTTTACCAAGCTGGTGTGACACTGTCAGGTGGGAGTAAGTTGCCCCCGTCCATCTTGTGTGCTCAAAAGATGTTAGCAGTATGCCAGGCCTTAACCTCCAGTCCTCCATCCTCCTCTCAAAGTTGTAGGCTACATTTTCTCTTCTGGGCTCAAATCCTGAAAGCATAGTGGCCCCTGTGGCTTTCAGCTGGTAGAGTTCCCATGAACAGAGCCGTCTTGTACCAGGGTTTTTAAGTGTGTCTGTCTATCTTGTAGGCCAGGATTTTAAGTCTGTCTATCTGTCTATCTGTCTATCTCAATCCTGTGGTTGATTATTCTTTTTTATTGTTTTTCCCCCAAAATGGAGTTTTTCCCTGTAGCCCTGGCTGCTTTGGAAATTGCTTTATAGCCCAGGCTGGCCTCAAACTCACATAAGTCCATCTGCCTCTGCCCTCTGGGTGCTGGGATGAAAGGCGTGCACCACCCCACCAAGCCAGATCTGTTCTTGCATGGAGCTGTCTGCCCTTCCTTTTTTTCTGTACCTACTCTACCCAGGCTTCTTCACTCCCTGTTGAACTGTGGTTCTCATCTGTATTCAGCAGTGCTTCATCCTCATCGCTTGTTAACACTTGCTAACCACTGGTGCTGAGGACAGGGCAGCAGGTCTGTTCTCACGATCACCAAGTGACACCAGTCTGATGGACAGGCCAGACTGACCCACTGTCATTGTTCCCTGAGAATGCCTGCTTCTTGTGTGATTAAATGTGTTTTATAGTCTGTTCTTTCTGCCAGAAATTCTGAGTGGCACCTTCAGGCAGCGTCCTCCCTTCAGCATGTGTGAGCTTTCACTCTCCTTAGTGTCTTCTACATCTCTATAGCCTTCTCCAATGCGAATGTCGCTGCCCCTGGTGTTAGACATTCAGGGTGTGGACCACCCTCCCTGACTGTCCACTGCTGACCAGGAGTCTGGCTTCCTTCGTCTCTATTTGGATTTCAGCCAGCAACCTAAGTAGGCGGATACTGTTTGTACTGTAGGTTGGCTCACTGCCGTCTCCATAATGTCGGGTTGTCAGAAAAGTCAGGGTGTGGAAGACTGGCCTTGAGCTTGGCCATAGTGATCTCGGCATTGGGTGGGGTGATGTTTTTCCCCATGCCTCTTTCTGTGTCCTGTATGAGGCCTCTGTATAGTCAGGTAAACCTGAGGTGTGACTCAGGCTTCTCCCAGATACTGCTAACGTTGTCCCAGCCTGTAACTCTGCCTAGTGCAGTCCTGGACTCAGCTCTGCTCATGTCCTGGATTAAACTGTCTCCCCACCCCTCTGCCTCTTCTTTCTCCCTTTTCCAGTTGCCTCTAGGTCTCCACCAAACTGAGACTGTCAGGAACCTCATTTTGTTCTGGGCAAGGCTACTACATGGTTGTGTGTTGACTACTTCATGGAATTGTCTTGTCTATCAGTCAGAACTGGGCTTAATCTTAAGGAAGAGGGTCTAGGAGAGACTTGAAGACAGGTTTCTCTGAGCTTTTTGAAGAAGAGTCCAGTATTCCAAAGCCTGACCCCTCCCAGTATCATAGAACCTCTGTACCTAGTTGCCCCTGGTAGGGAGGACCCATGCCTGGACCAGATAAGGGATCCTGCTTCTGATCCCTGGGAGTGGGGCTTGGTGGGGGCCTCTGAAAACCCAGGCCTGGAACCAAACCTGAGCCTTCTCTCTGCTGTGCCCTCAG
Seq C2 exon
TGCCCAGTCCCCGAGCCAGGGTCACCACGCTGTCCAACCCTTTGGCGGCCTCGGCCTCCAGATGGACTGCGTCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008392:ENSRNOT00000072955:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=NA C2=0.444
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.0=100)
A:
NA
C2:
PF066029=Myotub-related=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]