DreEX0064245 @ danRer10
Exon Skipping
Gene
ENSDARG00000062968 | sbf1
Description
SET binding factor 1 [Source:ZFIN;Acc:ZDB-GENE-040718-139]
Coordinates
chr4:9984352-9985480:+
Coord C1 exon
chr4:9984352-9984447
Coord A exon
chr4:9984906-9984980
Coord C2 exon
chr4:9985308-9985480
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTCATGTGACCTTAGCGC
3' ss Score
5.4
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
ACTCATCAGATAAGCTGAGGCAACCTAAAATAGGAGCTCTGATGAAGCAAGTGATGGGAGCTAAAGAGGACGTACCAGGAACCTTCAGTCGAGGAG
Seq A exon
CGCTGGGTCAGAGGGCGAGGGTGGTCTCCCTCTCTCAGCCTAGAGTTTCAGTCAAGGCCCGCAACTCGCCCAGAG
Seq C2 exon
GGAAATGGGGCAGTATTCGTGGAAGTGGTCGGCTCAGTACGTATAACCCTGATGTGGGGAACAGGCTAGCTGGGAAAGAGTCACCGCAGGCTAATGGAGGCCCAAGCGAGACCTACTTCCTTCGGCAACAGAGAGCGTACTTGTTCATCATTGGAGACAAGTCCCAGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062968-'35-40,'35-38,36-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.758 A=0.538 C2=0.371
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(6.6=100)
A:
PF066029=Myotub-related=FE(5.1=100)
C2:
PF066029=Myotub-related=FE(13.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGAACCTTCAGTCGAGG
R:
ACAAGTACGCTCTCTGTTGCC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]