GgaEX0018830 @ galGal3
Exon Skipping
Gene
ENSGALG00000012449 | MBD5
Description
NA
Coordinates
chr7:36310136-36313001:+
Coord C1 exon
chr7:36310136-36311164
Coord A exon
chr7:36312431-36312676
Coord C2 exon
chr7:36312790-36313001
Length
246 bp
Sequences
Splice sites
3' ss Seq
TCCCCCCCTCACCACCTCAGTAC
3' ss Score
5.45
5' ss Seq
AAAGTGTGG
5' ss Score
-1.01
Exon sequences
Seq C1 exon
GCAACAGCAAAATAACCCTTTGCCCTCAGTAACACAGATGACAGCCCCACCTGACCATTTGCCAAGCAATCAGTCAGAAAGCAACAGGGTTGAGACCCTTTTAAGCAACCCCCTGGGGAACCCTTTACCAAGCTTTTCAGGCACTGACACTACTTCTAACCCCCTGCTCCTCCCAGCTGTCTCTGGGGCCTCAGCATTAATGGCCTTGAATCCCCAGCTGGTGGGAGGTGTCCTGAACTCTGCGTCGGGCAACACCGCTAATCATCCAGAGGTTTCCATAGCCACCTCCTCCCAAGCAACCACTACCACAACCACTACATCATCAGCAGTGGCAGCACTGTCTGTCTCTACCCTGGGTGGTGGGACAGCAGTGGTGTCAATGGCAGAAACATTGCTGAACATATCTAATAATGCTGGGAATACATCTGGTCCAGCTAAACTCAACAGTAACTCTGTGGTGCCACAGCTACTTAACCCTCTACTGGGGACAGGTCTGCTTG
Seq A exon
TACTGTATGAAGCAGTCACTCTTTGGAAACTAGGAGTAAGATCCCAAGACACCGAATGTCGTAGAAGCTCATTCTGCCATACTTGGCTGTGTACCATTCCACAGGCAAAGATAGTCATGACAGAAACCTTTAGAAAGAGTCCAGATAGATGTGACATGCAAAAGAAGCAATACTGAAGAAATAAAGGAATAAAGAGTAGGAGACACATGCCTTGAGGACCATTCCATAGAAGATTGAAGGGGAAAA
Seq C2 exon
GTGACATGTCATCTATAAACACTACTTTGAATAACCATCAACTGAGTCATCTCCAGTCACTATTAAACAACAATCAGATGTTTCCTTCAAATCAGCAGCAACAGCACCTTCTCCAGGGGTATCAGAACATGCAGGGCTTTCAAGGCCAGCCCCCAATTCCTGGCCCAGCTAACAACCCAAACCCCATGGCATGTCTGTTCCAAAATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012449-'8-8,'8-7,9-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=0.017 C2=0.789
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGCACTGTCTGTCTCTA
R:
GATACCCCTGGAGAAGGTGCT
Band lengths:
294-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]