GgaEX0018830 @ galGal4
Exon Skipping
Gene
ENSGALG00000012449 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr7:34182533-34185398:+
Coord C1 exon
chr7:34182533-34182859
Coord A exon
chr7:34184828-34185073
Coord C2 exon
chr7:34185187-34185398
Length
246 bp
Sequences
Splice sites
3' ss Seq
TCCCCCCCTCACCACCTCAGTAC
3' ss Score
5.45
5' ss Seq
AAAGTGTGG
5' ss Score
-1.01
Exon sequences
Seq C1 exon
GGGGTTCAGGACCATCATCATCAATAGCCATAGCTGGCACCAGCCAACCTGCCATCACAAAGACAACATCTGTTCTTCAAGATGGTGTTATAGTCACTACTGCAGCTGGAAACCCTCTTCAGAGCCAGCTGCCCATTGGGGGTGATTTCCCTTTCGCTGGCCACGAACACTCGCTTCATTTCCCGCAGAACAGCTCTTCAAACAACAATCTTCCACCTTCTTTGAATCAAAACCTCCTCAGTTCTCTACCTATCTCTTTGCCAGTGAATCAGCAACATCTCCTAAGCCAGAATCTATTAAATATACTGCAGCCTTCAGCAGGAGAAG
Seq A exon
TACTGTATGAAGCAGTCACTCTTTGGAAACTAGGAGTAAGATCCCAAGACACCGAATGTCGTAGAAGCTCATTCTGCCATACTTGGCTGTGTACCATTCCACAGGCAAAGATAGTCATGACAGAAACCTTTAGAAAGAGTCCAGATAGATGTGACATGCAAAAGAAGCAATACTGAAGAAATAAAGGAATAAAGAGTAGGAGACACATGCCTTGAGGACCATTCCATAGAAGATTGAAGGGGAAAA
Seq C2 exon
GTGACATGTCATCTATAAACACTACTTTGAATAACCATCAACTGAGTCATCTCCAGTCACTATTAAACAACAATCAGATGTTTCCTTCAAATCAGCAGCAACAGCACCTTCTCCAGGGGTATCAGAACATGCAGGGCTTTCAAGGCCAGCCCCCAATTCCTGGCCCAGCTAACAACCCAAACCCCATGGCATGTCTGTTCCAAAATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012449_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=0.017 C2=0.789
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000020351fB2243
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCTTCATTTCCCGCAGAA
R:
GCCCTGCATGTTCTGATACCC
Band lengths:
295-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]