GgaEX0018880 @ galGal3
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
NA
Coordinates
chr7:36791052-36792292:+
Coord C1 exon
chr7:36791052-36791194
Coord A exon
chr7:36791973-36792015
Coord C2 exon
chr7:36792203-36792292
Length
43 bp
Sequences
Splice sites
3' ss Seq
CTGTGTCTTTTCTTTTCCAGAGG
3' ss Score
11.82
5' ss Seq
TCGGTACAT
5' ss Score
4.33
Exon sequences
Seq C1 exon
TTGAAATTGGAGTTTTCAGCTTCAAAGCCTAAAAGTGACGTACTTCTGGAAGAGGAGAAATCTGTTGATTTTGTGTTCATTCCCCCAGAAACAAAAGCAAGGATATTGACAGAACATCAAAAAGAAGTGCTTAGGTCAAAGAG
Seq A exon
AGGGTGGAGTGGAATGTGTGCTTACAGAGTCTCCTGATACTCG
Seq C2 exon
AGTTGGTATTCCTGCTATGTACAACAATTTAGACTCATCACAAGATACTACCTTATTTTCTCAGTATACTCAGAGCCAGGAAGACTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484-'34-37,'34-36,35-37
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCAGAAACAAAAGCAAGG
R:
AGTCTTCCTGGCTCTGAGTAT
Band lengths:
148-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]