GgaEX0018880 @ galGal4
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr7:34664502-34665743:+
Coord C1 exon
chr7:34664502-34664644
Coord A exon
chr7:34665424-34665466
Coord C2 exon
chr7:34665654-34665743
Length
43 bp
Sequences
Splice sites
3' ss Seq
CTGTGTCTTTTCTTTTCCAGAGG
3' ss Score
11.82
5' ss Seq
TCGGTACAT
5' ss Score
4.33
Exon sequences
Seq C1 exon
TTGAAATTGGAGTTTTCAGCTTCAAAGCCTAAAAGTGACGTACTTCTGGAAGAGGAGAAATCTGTTGATTTTGTGTTCATTCCCCCAGAAACAAAAGCAAGGATATTGACAGAACATCAAAAAGAAGTGCTTAGGTCAAAGAG
Seq A exon
AGGGTGGAGTGGAATGTGTGCTTACAGAGTCTCCTGATACTCG
Seq C2 exon
AGTTGGTATTCCTGCTATGTACAACAATTTAGACTCATCACAAGATACTACCTTATTTTTTCAGTATACTCAGAGCCAGGAAGACTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=0.000 C2=0.710
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000037786fB2248
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCAGAAACAAAAGCAAGG
R:
AGTCTTCCTGGCTCTGAGTAT
Band lengths:
148-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]