GgaEX0018891 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36836362-36840585:-
Coord C1 exon
chr7:36840481-36840585
Coord A exon
chr7:36838243-36838347
Coord C2 exon
chr7:36836362-36836466
Length
105 bp
Sequences
Splice sites
3' ss Seq
GTTGCCATTTGCATGAACAGAAC
3' ss Score
4.81
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CATAAGTACAAGGAGACGTTTGAAAAGACAAAGTCTCATTTCAAGTACGTAGCTGACTCTCCAATTAACAGGCATTTTAAACATGCAACTCAGTTGCTGGATGCG
Seq A exon
AACAGTTATAAATCCCTTGCCAAGATGCTCCTGAAACAAGGGTGCAATGAAATTCTGAGGCCAGATATCCTGACAGCACTCTACAACTCATACTTATGGAGCCAG
Seq C2 exon
GTTGAGTACAAAAAGGACTATGAGAAGAAGAAAGATAAGTATACCACAGTTGTGGATACTCCAGAAAACATAAGGACTGCAAAAGTCAACAAACAGATTAGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495_MULTIEX2-2/2=C1-C2
Average complexity
ME(1-2[100=100])
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PU(53.6=42.9)
C2:
PF0088013=Nebulin=PD(39.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAAGTACAAGGAGACGTTTGAAA
R:
ATCGCTAATCTGTTTGTTGACTTT
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]