DreEX0050039 @ danRer10
Exon Skipping
Gene
ENSDARG00000032630 | neb
Description
nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
Coordinates
chr9:23025059-23028061:-
Coord C1 exon
chr9:23027957-23028061
Coord A exon
chr9:23026858-23026962
Coord C2 exon
chr9:23025059-23025160
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTCCTCAATGGACAGGGA
3' ss Score
6.17
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
AGACTCTACAAAGCATCATTTGAGAAAAACAGAGCCAACTTCAAGTACACATGTGACACACCATTCTTTGAGGCTGCCAAGAACGCTTCACTTCTGATCAATGAC
Seq A exon
GGAAAATATAAATGCAAGGCCAAGGAGTTACTCAAGGGTGGCTGCAATGAGCTGCTCCGTCCCGACATTCTCGTTGCCATGTACAACTCTGGCATGTGGAGTAAG
Seq C2 exon
TGGAAGTACAAAGAGCAGTATGAACGTGCCAAGTCAAAATACACTGCAGTTCTGGACACCCCTGAATATCAAGTCGCCAAGCGCAGCAAGCAGATCAGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032630_MULTIEX3-23/26=21-24
Average complexity
ME(22-23[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NO
C2:
PF0088013=Nebulin=PU(53.6=44.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCTACAAAGCATCATTTGAGA
R:
ATCGCTGATCTGCTTGCTGC
Band lengths:
207-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]