DreEX0050038 @ danRer10
Exon Skipping
Gene
ENSDARG00000032630 | neb
Description
nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
Coordinates
chr9:23025059-23028061:-
Coord C1 exon
chr9:23027957-23028061
Coord A exon
chr9:23027490-23027591
Coord C2 exon
chr9:23025059-23025160
Length
102 bp
Sequences
Splice sites
3' ss Seq
AATTTTGAAATTCTGAGCAGAGG
3' ss Score
1.61
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AGACTCTACAAAGCATCATTTGAGAAAAACAGAGCCAACTTCAAGTACACATGTGACACACCATTCTTTGAGGCTGCCAAGAACGCTTCACTTCTGATCAATGAC
Seq A exon
AGGTCCTACCGTGCCAGCTATGAGAAGTCTAAGGATAAGTACACCATAGTTGTAGATGACCCTAGAAACGTCTTGGCTAAGGAGAACAGCAAGATGAGTCAG
Seq C2 exon
TGGAAGTACAAAGAGCAGTATGAACGTGCCAAGTCAAAATACACTGCAGTTCTGGACACCCCTGAATATCAAGTCGCCAAGCGCAGCAAGCAGATCAGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032630_MULTIEX3-22/26=21-24
Average complexity
ME(22-23[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=32.4)
C2:
PF0088013=Nebulin=PU(53.6=44.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCTACAAAGCATCATTTGAGA
R:
ATCGCTGATCTGCTTGCTGC
Band lengths:
207-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]