GgaEX0018890 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34709386-34713609:-
Coord C1 exon
chr7:34713505-34713609
Coord A exon
chr7:34712025-34712129
Coord C2 exon
chr7:34709386-34709490
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTTATGCTATTCTGAGCAGAAA
3' ss Score
4.57
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
CATAAGTACAAGGAGACGTTTGAAAAGACAAAGTCTCATTTCAAGTACGTAGCTGACTCTCCAATTAACAGGCATTTTAAACATGCAACTCAGTTGCTGGATGCG
Seq A exon
AAATTATATAAAGCTGCCTATGAGAAGCTCAAAGATAGGTACAGCGTTATTGTGGATGATCCTAAGAACCTCCTGGCCAAGTGGGGGACTACACTGAGCAGTCAG
Seq C2 exon
GTTGAGTACAAAAAGGACTATGAGAAGAAGAAAGATAAGTATACCACAGTTGTGGATACTCCAGAAAACATAAGGACTGCAAAAGTCAACAAACAGATTAGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495_MULTIEX1-1/33=C1-3
Average complexity
ME(1-2[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4)
C2:
PF0088013=Nebulin=PD(39.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Inclusion Isoform:
ENSGALT00000020417fB2249
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAAGTACAAGGAGACGTTTGAAA
R:
ATCGCTAATCTGTTTGTTGACTTT
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]