RnoEX0058989 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37696590-37700401:-
Coord C1 exon
chr3:37700297-37700401
Coord A exon
chr3:37698835-37698939
Coord C2 exon
chr3:37696590-37696694
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTAATATGATGTTTGAGCAGAAA
3' ss Score
3.6
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
TATAAGTATAAAGAAGTATTTGAAAGAACAAAGTCAAACTTCAAGTATGTTGCTGACTGTCCAATTAACAGGCATTTCAAGTACGCAACTCAGTTGATGAACGAG
Seq A exon
AAAAAATACAGAGCTGATTATGAGCAGCGGAAAGATAAATACCACCTGGTAGTCGATGAACCTAGACATCTGCTGGCTAAGACGGCAGGCGACCAGATCAGCCAG
Seq C2 exon
ATCAAATACAGGAAAAAGTATGAGAAGTCAAAGGACAAATTCACCTCCGTTGTGGACACCCCGGAGCACCTGCGCACCACAAAAGTCAACAAGCAAATCAGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'125-135,'125-133,126-135
Average complexity
ME(133_126-134_127[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGAACAAAGTCAAACTTCAAGT
R:
GTCACTGATTTGCTTGTTGACT
Band lengths:
190-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]