GgaINT0049796 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34711267-34713609:-
Coord C1 exon
chr7:34713505-34713609
Coord A exon
chr7:34711372-34713504
Coord C2 exon
chr7:34711267-34711371
Length
2133 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
GTTGCCATTTGCATGAACAGAAC
3' ss Score
4.81
Exon sequences
Seq C1 exon
CATAAGTACAAGGAGACGTTTGAAAAGACAAAGTCTCATTTCAAGTACGTAGCTGACTCTCCAATTAACAGGCATTTTAAACATGCAACTCAGTTGCTGGATGCG
Seq A exon
GTAAGTGTTAAAGATTTCTCTTAATATGGAATCAAGGGTTGACTGTCCTCATGAATTTGCAAATAAATGAAAATAGATTCAGAGCTAACGATGTCTCAATGTCAGTCTGAAATCAGGAAATGCAAGGTTGTTCCTGTGACCTTCCTGAATGTTAGCACGGAACAGATTATGCAGTAACTAAAAAGTAAAGTCTTGACCCCTCCCTGCTCCATTTTTGAAATTGCTGGAAAAAAAATTTTGCTTTGCTGACCAGTAAAGGGCTGCTAACTTGATAATATTACTTGCTGAGTAAGACTGAGTAAAAACTGACCGTTGATTGCAGTGTGGAAGAAGGTGTAAAGAGAATTAAAACATAGTATTATGAGTGTAGTATAGTCGTAGTATTAAGATAGTATTGTGCCCAAAGTAATCATAGCTCAGTTTCATTTCTGATACTCTGCCTTGAATTTTCTGACTCTACGACTTAGCTGTTTTCTCCTGTAGTGCTAAAGAAGCAATGAATTTAATATATTAGGAATATTGAATTTGCCAATTAGTTGCTAGAAGTGGTACTTAATGCTTAGGAAAAAGACCCCTGAAAATCTGTGTATGGTCTCAGTAAATTCTTATCAGCTTAGAGCTGGCTTACAAACCAGTCCCATAGAGGGGAAAAAAAATAAAACAACCCAGCAATCTGATTAATTGCAGATACCATCACTACAATTTAATACTCAATCTGATGAGCAGTGAACCAGAATTTGTGAAGGAAGATTGTTAATATTTAGTCTTACTGTTCTTTGGTAGAGCAAATAAGGAACAAATTATTATGAAGGACATGGAAGAGAAAAGTCTTAACAAGAGGGGCCCCATACACTGAAATAAACTTACTTAAATGTCTTCTGTTATGTGAGTGATGTTTTCATGATGGATTATAGTTTCTGATTACAGAAAGTCTGACGATAATGCAACTCTAATTCACCCTTCTGTCTCATCATGCTCTCTTTGTACTCAAATCAAGAATCTAGTTCCATACAGGGTTGCGTCAGCAGCTCTTTTTCATGAAGAAAGTAAGCTATAAAATGGCTTCTTGAAGATTGACAGGAACAGGGTTGGAGGTATCCTTAAGTTGTAAGTTAGGCCTTGCAGTGGAAATTTAGAGTCGCATATGTTCTTTGGGTATATTTTTCTAGTTTTTTTCCTTGTTTGTTTATTCTTTGTGTTTTGTGTTATGGTTTTTTTTTTTAAATAAGAAATTTTCTATTTTCGATGTGCACTTCAATCCTTGTCTTTGAATATTTCATATGAAGAGGTTTAAATGATTCAGCTGTGATCTCAGGATCTCTGTCTTCACTGTCTTCTTTTAATTTGTTACAATTTGTTATGCTATTCTGAGCAGAAATTATATAAAGCTGCCTATGAGAAGCTCAAAGATAGGTACAGCGTTATTGTGGATGATCCTAAGAACCTCCTGGCCAAGTGGGGGACTACACTGAGCAGTCAGGTACCGTAGGAGTACTTGCCAGTGCTGCCAGAAAGTGCCTGGTTCACTCCCAGCTACTCTGTCTGTGTGAAATGTTTACAGCTGGCAGTATCAGAGGTTTCACCTGTGATATTGTGATGTTTTAGTTCAGATCAGATAGTCTTAGTTTTGCCACCCAAAAAGGACTGTTACTTTTTGAGTGAGCTAGTCTCTACTGTATGTACTTTCATGTATTGTGCATCAATTGACATCATCATCAATTAATTTCCAATCTAATGCCTGTTGAAGTCAATGGAGAGGTTTTAAAAAATGCATGTTGTGTCATGCATTTATTTATTACCTCTCTTTCATTGGCTTCCACAAATACTGTCGTCTTACTTATTTCCAGATAAAGCAGCAGTGGCATATTGGATTTTTGAGTGCCCTTGCCTTTATCTGTAATTTACTCTTTTATCCCCAAAAATATTCTCTTAATTTTCTTAATGGGATAATTAACAAATTGTTCAGTATACGCTCTTAATTATGTAGATGTAAATTGTATGCACATCTGAATGAATACATACAGTACTGTGCCTAAATCTCTCCACTCTCAAGGTGTCAGGGATCTAGAGCTGTCTTATTGTTTACGGTGTTCACAAGTCTTTTTTGTGCTTCGTTGCCATTTGCATGAACAG
Seq C2 exon
AACAGTTATAAATCCCTTGCCAAGATGCTCCTGAAACAAGGGTGCAATGAAATTCTGAGGCCAGATATCCTGACAGCACTCTACAACTCATACTTATGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020417:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PU(53.6=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]