GgaEX0018919 @ galGal3
Exon Skipping
Gene
ENSGALG00000012513 | STAM2
Description
NA
Coordinates
chr7:37042671-37044913:-
Coord C1 exon
chr7:37044829-37044913
Coord A exon
chr7:37042982-37043057
Coord C2 exon
chr7:37042671-37042766
Length
76 bp
Sequences
Splice sites
3' ss Seq
ACTAATACTTTCTTCTTTAGGGC
3' ss Score
9.81
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
AAAAGGCTACAAATGAACACAACACCAGTGAGGACTGGGGTCTTATTATGGACATATGTGACAAAGTTGGAAGTACTCCTAATGG
Seq A exon
GGCAAAGGATTGCCTTAAAGCCATCATGAGGAGAGTAAATCATAAAGTTCCCCATGTGGCTCTGCAAGCGCTCACA
Seq C2 exon
CTTCTAGGAGCCTGCGTATCAAACTGTGGAAGAATATTTCACTTAGAAGTTTGTTCTCGTGATTTTGCTACTGAAGCTCGAGGTATAATAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012513-'3-4,'3-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.241 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(20.7=100)
A:
PF0079014=VHS=FE(18.5=100)
C2:
PF0079014=VHS=FE(23.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCTACAAATGAACACAACACC
R:
CTTCAGTAGCAAAATCACGAGAACA
Band lengths:
159-235
Functional annotations
There are 0 annotated functions for this event