RnoEX0086639 @ rn6
Exon Skipping
Gene
ENSRNOG00000027447 | Stam2
Description
signal transducing adaptor molecule 2 [Source:RGD Symbol;Acc:1311497]
Coordinates
chr3:38252798-38254161:-
Coord C1 exon
chr3:38254077-38254161
Coord A exon
chr3:38253003-38253078
Coord C2 exon
chr3:38252798-38252896
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCCACTTTTTTGTAGAGC
3' ss Score
8.79
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
AAAAAGCCACAAACGAGTACAACACCACAGAAGACTGGAGTCTGATCATGGACATCTGTGACAGGGTTGGAAGCACTCCCAATGG
Seq A exon
AGCAAAGGATTGCCTAAAAGCTATAATGAAAAGGGTAAACCATAAGGTCCCTCATGTTGCTCTGCAGGCATTAACT
Seq C2 exon
CTTCTTGGAGCTTGTGTGGCAAACTGTGGAAAGATATTTCATTTAGAAGTATGTTCCCGTGATTTTGCAACAGAAGTACGTGCTGTGATAAAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027447-'8-5,'8-3,9-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(20.4=100)
A:
PF0079014=VHS=FE(18.2=100)
C2:
PF0079014=VHS=FE(23.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACAAACGAGTACAACACC
R:
ACAGCACGTACTTCTGTTGCA
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]