GgaEX0018985 @ galGal3
Exon Skipping
Gene
ENSGALG00000012561 | PKP4
Description
NA
Coordinates
chr7:38060522-38062941:+
Coord C1 exon
chr7:38060522-38060672
Coord A exon
chr7:38062266-38062376
Coord C2 exon
chr7:38062753-38062941
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTGATTTCCTTTGTTTGCAGTGT
3' ss Score
8.53
5' ss Seq
ACTGTAAGG
5' ss Score
5.19
Exon sequences
Seq C1 exon
TTTGCAGCATACATTCGAGCTGCTGTGAGGAAAGAAAAAGGACTGCCAATCCTTGTGGAACTCCTGAGGATGGATAATGATAGAGTCGTTTCATCTGTGGCAACCGCCCTAAGGAACATGGCGTTAGATGTTCGGAATAAGGAGCTCATTG
Seq A exon
TGTGGTTATTCCTGTCAGTCAGTCACTGAAACTGAAGGAGCTGAGATCTGATCTCTTGTGGGTGACAAGCAGGGTGAACAGAATGTCTGAAGGAAAAAGGCGCACACGACT
Seq C2 exon
GTAAATACGCTATGCGAGATCTGGTGAATCGCCTGCCAGGAGGCAATGGCCCAAGCATACTGTCTGATGAGACCGTAGCAGCAATCTGCTGTGCACTGCATGAGGTCACCAGCAAAAACATGGAGAACGCCAAAGCCCTCGCGGATACTGGGGGAATAGAAAAGCTGGTGAACATAACGAAAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012561-'32-35,'32-34,34-35
Average complexity
S
Mappability confidence:
89%=100=75%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=74.5)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCGAGCTGCTGTGAGGAA
R:
TCATGCAGTGCACAGCAGATT
Band lengths:
243-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]