GgaEX0018985 @ galGal4
Exon Skipping
Gene
ENSGALG00000012561 | PKP4
Description
plakophilin-4 [Source:RefSeq peptide;Acc:NP_001006529]
Coordinates
chr7:35925277-35927703:+
Coord C1 exon
chr7:35925277-35925441
Coord A exon
chr7:35927021-35927131
Coord C2 exon
chr7:35927508-35927703
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTGATTTCCTTTGTTTGCAGTGT
3' ss Score
8.53
5' ss Seq
ACTGTAAGG
5' ss Score
5.19
Exon sequences
Seq C1 exon
TTTGCAGCATACATTCGAGCTGCTGTGAGGAAAGAAAAAGGACTGCCAATCCTTGTGGAACTCCTGAGGATGGATAATGATAGAGTCGTTTCATCTGTGGCAACCGCCCTAAGGAACATGGCGTTAGATGTTCGGAATAAGGAGCTCATTGGTGAGTCCAGAACG
Seq A exon
TGTGGTTATTCCTGTCAGTCAGTCACTGAAACTGAAGGAGCTGAGATCTGATCTCTTGTGGGTGACAAGCAGGGTGAACAGAATGTCTGAAGGAAAAAGGCGCACACGACT
Seq C2 exon
GTAAATACGCTATGCGAGATCTGGTGAATCGCCTGCCAGGAGGCAATGGCCCAAGCATACTGTCTGATGAGACCGTAGCAGCAATCTGCTGTGCACTGCATGAGGTCACCAGCAAAAACATGGAGAACGCCAAAGCCCTCGCGGATACTGGGGGAATAGAAAAGCTGGTGAACATAACGAAAGGAAGAGGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012561-'36-43,'36-42,37-43
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=74.5)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000020513fB2268
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCGAGCTGCTGTGAGGAA
R:
TCATGCAGTGCACAGCAGATT
Band lengths:
257-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]