GgaEX0019022 @ galGal3
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38205931-38211457:-
Coord C1 exon
chr7:38211383-38211457
Coord A exon
chr7:38206836-38206878
Coord C2 exon
chr7:38205931-38206174
Length
43 bp
Sequences
Splice sites
3' ss Seq
TGTGGGATCTTGTCTTATAGGGT
3' ss Score
8.83
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
TGAAATTGATAAAAATATTGATTATATGTCGAACTTGAGGAGAGATAAATGGATGGTTGAAGGCAAACTTCGGAA
Seq A exon
GGTTTTTATAGAAGAAGAAGGTCTACAACAACTATAATTACTG
Seq C2 exon
TCTTAGAATCATTCATGCCAAAAAAACTGGCAAAAGAGATGCTACAGGAGGTGGTGAAGTAGGAGAGGAGCCGCATTCTTTGGAAACACCAACACCAGGCCGCAAACGGAGACGAAAGGGTGGGGATAGTGATTATGATGATGATGATGACGATGATAGTGATGATCAGGCAGATGAGGATGATGAGGATGAAGAGGACAAAGAAGATAAAAAAGGAAAGAAGGCGGAAGTTTGTGAGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579_MULTIEX1-20/23=19-21
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.902
Domain overlap (PFAM):
C1:
PF0334410=Daxx=FE(6.5=100)
A:
NO
C2:
PF0334410=Daxx=FE(20.9=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGTTGAAGGCAAACTT
R:
CACCCTTTCGTCTCCGTTTGC
Band lengths:
148-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]