GgaEX0019022 @ galGal4
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36069594-36075120:-
Coord C1 exon
chr7:36075046-36075120
Coord A exon
chr7:36070499-36070541
Coord C2 exon
chr7:36069594-36069837
Length
43 bp
Sequences
Splice sites
3' ss Seq
TGTGGGATCTTGTCTTATAGGGT
3' ss Score
8.83
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
TGAAATTGATAAAAATATTGATTATATGTCGAACTTGAGGAGAGATAAATGGATGGTTGAAGGCAAACTTCGGAA
Seq A exon
GGTTTTTATAGAAGAAGAAGGTCTACAACAACTATAATTACTG
Seq C2 exon
TCTTAGAATCATTCATGCCAAAAAAACTGGCAAAAGAGATGCTACAGGAGGTGGTGAAGTAGGAGAGGAGCCGCATTCTTTGGAAACACCAACACCAGGCCGCAAACGGAGACGAAAGGGTGGGGATAGTGATTATGATGATGATGATGACGATGATAGTGATGATCAGGCAGATGAGGATGATGAGGATGAAGAGGACAAAGAAGATAAAAAAGGAAAGAAGGCGGAAGTTTGTGAGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579_MULTIEX3-9/11=8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.903
Domain overlap (PFAM):
C1:
PF0334410=Daxx=FE(6.5=100)
A:
NO
C2:
PF0334410=Daxx=FE(20.9=100)
Main Inclusion Isoform:
ENSGALT00000020542fB2276
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGTTGAAGGCAAACTT
R:
CACCCTTTCGTCTCCGTTTGC
Band lengths:
148-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]