GgaINT0050419 @ galGal4
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36069594-36075120:-
Coord C1 exon
chr7:36075046-36075120
Coord A exon
chr7:36069838-36075045
Coord C2 exon
chr7:36069594-36069837
Length
5208 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TCCTTGTCATGTTTTTGAAGTCT
3' ss Score
5.25
Exon sequences
Seq C1 exon
TGAAATTGATAAAAATATTGATTATATGTCGAACTTGAGGAGAGATAAATGGATGGTTGAAGGCAAACTTCGGAA
Seq A exon
GTAAGTTTCATTTCCTGAAGTATCACTATGTATTGCTTTTTTGCATTTGCTCATATATGCTGCTATATGGTCTATTGATTCTAAGGACAAAAATAGCTGATTCCATTACAGGTTTACCAAGAAGTTAGTACCTGAACTACCTAATTCAGGTGGACATGAATTTAGAATGGTCCTGCACCGGTCTTTTATAACATGCTAAGGAAGAGGTTTTTGCCTCTCATAATTAGAGTTAAGTCCATTTTGTATTCTTTGGGAAAAAAAGTGAAATCTACTTTATTGGAATATTACAGGAGCTGTCATATTGTGATTGACATTATAAGTTTATTTGGACCTACCATACTTAGCAGTGTTCTTTCTGAAAGGCATTTTAAGACATGGTTTTCATGCAACCGTCACCCATCAAATTTTGCCAATTTATATTACATAATATTAACACTTCCATTTTATGTTTGTTACATCATTCCCTATACTTAGGGATCATCTCTAGCATGCAAACATTGAGATATTTCAATATTTTTATTTAAAATAAAATTGGAATTTTTAAAGGGTTCTTCAGCTTCATACCCACTGTTCTCCCATCCTACAAGACAAAATTCCATACAGCAAGCATAATGGCTCCAACTACCAGGAAGCTAGAAGGCATAAATTTCATGAATCACAGGTGGTAAAAATGTATAGCCAGACTCTACTTTCTTATTTCTTGGTCATCTTTACCTCTAACCAGGAACGGTGAATCCTTTCTTAACCCTTGCTTTAGGTACTTACGTTTCTAATCTTGTTTCTCCCTTTTTTCCCTTTAATGTATCTGCGAAGGAAGAAGGAAGAACTAAAGAAGAAGGACAAGAGGGAGGTAGAGGAAAAAATAAGACCAATAAAAAGAAATTCTCTACTAATAATGCAAATCCCCGTCTATGCAGGCTTAATGCATTTTATCTCTTAGGATAGTACACGTGCCTTTTCCTGTCTTCATCTGTAACCCTTCTGTGATTCTACGTAGTTCTAGAAGTGTCAGTAAAGTCCTATTTAGCCAATTATTCCTTAACAGAATGGGACCCTTGCCTGTCCTTGTCCCCCATGGGGCCACTTAATCTTTCTCTCCCTCCATCGAACTGTAAGTACTGGTAGATTAGAATCCTCCTTTTTCTTGTCATCTTTCTTTTCTTTGCCTTCAGATAGTGGGGAATAAGACCCTAAAGTCCCATGCTCCTCTTCATTTCTAAAATCATTTCTCTATTTCTTGCTTTTTCCCTTCCTGTGTGGATGTGAGGTAACAGTAGTGCTGATCCTACTGTGAAGTGTAAGTGTTGTGGGAGTGTTCTGAGACATTCTTTCCTTCTTTGAAGTCACTAGATTTGACTCATCTATCTCATCCTTGATTCAAAATCTTTGAATTTTTCACTTTTTTTCTGATGAACTCTCAGAAGCTTTTAAGAAAAGCCTTCACTGATCAGTTTAAAATAGTGCTCTCTTTGTATGTCAGATGATGATTTTTATAAACTCTTACAGCTGTTCTGGGGCTTCTCTGAAAAGGAACCTGTCCATTTAAGTCTTCTGTTTGATCTTTTTTCTGCTTCCAGGTTTTTGTATGTTGTCTTCCCCAATCATTTCAGAGCTCACTCTGGTTTTTAAACCTTCCAGTTCCAAATAGTTTTAGGAATATCTGGTCTGTTGACTACTTGCCATATGATCAATGGATGTGTACTCTTCTTATATGCACACAAACCTCTACATGACCCTCAAAACACAAACTCATATGTGGGAAATATGTAGTAGTAGAATAAAGGATACTGAGAAATGGATGTATTGCAACTCAGCCTGGTTTACCAGATTGTTTGTATATGCTGTGTAAATCATCATACCATGATGTCCAGGTTGCCTTAAAGTACATCCAAGTGAGATGAGAAGAGATTCTGCATGTGTCAGAAGATTTTTTTTGTCACGAACAGATTGTTTTTTATGCTTATGATCCAACTGTTGATGAGATTAGCTCCTCAACTGGATATGAAGAATATCAGAAGGAAAAGAAAAAAAAAAAATATATATATATATATGCACGTATACAGACACACACACACATGCACACACACACACACACAAAAAATCTCCATGTATGTTGATTTATAAAAAAAAAAAAACAACAAAACATTAGAATCCAAGGCTGAAAAAAGGCTCCTTGCAGGGAGGCCTTTCCCTTTCCCTATCCCTTTCCTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTGCTTGTTTTTGTTTCCTTTGAGGTTTTGAACTGAATTCATTGATAAGTATAATCATATTTATGGTCAGAAACTGAACTCTGATGTGCTTTGGCTTCTTCTGTGGAATGAGAGGTTGCCTCTAGAGCCTTCTCTTTTGCATTTAGGAGTGAATCTTGTTACAGTCAGCATTTTTGTAAAAAGTATCTGTCTCATCATATCAAATAATCTTTCTTTGTGCTTTCTATATCACAGATATTGTCAGAAGACTGTCTCACCTGAGATGATTTTATTACTAGATAATTGTAACTTCCGGTGTCTCCTCTTCCACTACATGCCTTCTTCTTGACATCTCTTTTGTCACTTGGTCAATGTAAAAAGCAATTTAAAGAAATGGAGCATAGCTTCTTTAAGGATAATACCTGTTTCTTTACGGAACTTTGAAATACTGCAGAAGATGATTTTCATTACAGCATTCTTTTTAACATGCCGGTATTATAGAATCATAGAATCACAAGGTTGGAAAGGACCTACAAGATCATCTAGTCCAGCCGTCCTCCCATTACCATTGCTACTACAAGCCACTAAACCATATCTCATAGCTCCTCATCCAGACGCCTCTTGAACACTGCCAGGGACTGTGACTCCACCACCTACCTGGGCAGGAGGTGGTGTCATACATCTTATAAGTTAATTACTCTCCAGTGAGACCATCTCAATTGTAAATGATGATAGTAAATCAAAAGCAGTGTTACCTAAGGGTAGGAATTATATCCTGATTTTGGATAGGAGGTAATTCTGATTTGGGAAACTTTCATTATTTGAGAGCTAAGAAGGATAATGTTAAGAGAATGTGATATTTAGAATTTCTTTTCCTTGCTATTTCCTGGTATTTGATTTTAGTACAGAAGTTATGATGAATGCTTAAAAAATAAATCAGAAGGTGAATTTTTCTTCCATGATCTGATGAGCGTTACAGGTTAGGAAGAGCAGGCGTAAGTCACATATCTGAGTATCGCCTACTGTTTTGTGTACTGGACTTCACAGCATCCTTTATGGTTACAGAAGTCTTTCTGGTCTTTATGTGAAAGGAAAGATGAGTGAAAGAAAGTTTTTTGAGTGAAGGTTTTCTTCTGTTGGCCATACACCTAGGTAGTAGCAAGAAAATCATGCCACACTTACAAATCTGAACATTTTTTCTAAGTTACGTTCTCATTGATTTCTACCTCTACACAACTTTGTATAAAAAGAGCTGCTTTCTGACGCTTGTGTTGTTACAAAAAGAGGGCATTTCTGATTTATTTCCATTCCTACTTGTAGTGTCGTGCAAGCTTCCTTTGGTGCTTTCCAACATTGTATCTCTATTTTCAGCTCTAGCAAAAGTAGCTTTTTTCATTTGTTATCATTTATTTTAGATGTATGAATGAGTTGTGTTTCCTGATCACTGAGCTTCATCTGCTTACTCACTTCATTTTTAGTGAATTGTCTTCCAGATTATCTCAATCTTATTTGTCTCTAAAATTGCTCCACCACACAGCATTCAATCCAGTTGCTGACGAGTGGCTTGGTTTGATTACCGTACGGATGATTACTGTACATAGGTACAAGTTTCCAGTCCAGCTGAACAGGACTTGATAGTGTGAAGTTACCGTAGAAAAAAGTAAATCTTCTAAAAAAAATTAACTCGACAGACATCTCAGAGGGACTCAGTGAGCTAAGGCTTTTTGTACCAGAACTGAAAATAGTACTTGCTTCCAAATTCACTGGAAGGCTTGGGAAATTTTTTATCCAGAATATAATAAATTACTAAAATAGTTGTAAGAGGGCTACTACCAGTTGAACAGTGACAACTTCATTAAAATCTGTGCTGTTTGGTACTGGCGTGGTTTTATCAGCGTTATAAAAAGCTGATACTTTTGTCAGAGTACATCTATCAAGAAGCCAGTACTTTTACAACACTCATCATATTTGTAGCCACTTGCTGTATGGAATATTGTGTTGTAGGATGGGAAGAGAGAGAAGTATGACAAGGGAGAATTACGTGCTGGTAATTGTGTTTGTCGTTACCGTTCTACTTTTCCCATCCTACCTTCTTCCAGCCATCTCTTACAAAATCTTTGTCTTCCCTACACGTTTATGAATCTCTTCTGAGTCAGTTGCATTTTTTGGTCTGCATTATAAGTGATTAGGCCTGGCTATCTATACCTCCTGCGATTCAGCATGTTTGCCTGCTAGCTTCCTGATAGGTGGAACTGTAATTTTTGCTGTGTGGGATCTTGTCTTATAGGGTTTTTATAGAAGAAGAAGGTCTACAACAACTATAATTACTGGTATGTAAGTTTCCTTTTTCTTTCATAAAAGGAAAAATAAGGATTTGATTGAATCTCCTAATAGTTTAGGTAACCATGACTTCTCAAAGAAGAAAATATGTCATACAATGGAAAGATCAGCCAAAGGCCTGTGCTAAAGGGAAATAATATATAATAACTAAATAATAACTAAAAAAAACCCACAAAAATCTGAAATGAAAAAAATTACTTTGAAACCAACCTTGCTGTTGCCATGCAAATACAAAGAAATTCATACGTTCAGCTTAGGATTTTTCCTCCCTTTTTTTCTTCGACAGCTGTTTCATAAAGATACTCTTAACTGCATAAAACAGAGGCCAAATAGTTCTTTCTTCTAATTGTCTTTCCTGACTTTTCTATAACACTCTTGTATTCCATTTTTTTAAAATGATTACGTGATAAAATTTACCTGGAAGAAACAGTAATTCTAGGCAGAATTGGATAAGAGGTTTAAGGGCTTTCTGTAACCTGTTTTTTTTTTTCCTGTTGCTTAATGGCAATAAACAGGTAATAAAATGTAGAGCATCATAGAACAGAAGAGCTAATTTGACATAAAATGATTCACTTTTAATCACACAGGAACAAAGGTATGTTTGTGCTACAAATAAGCTCCATAATTTCACTCCTTGTCATGTTTTTGAAG
Seq C2 exon
TCTTAGAATCATTCATGCCAAAAAAACTGGCAAAAGAGATGCTACAGGAGGTGGTGAAGTAGGAGAGGAGCCGCATTCTTTGGAAACACCAACACCAGGCCGCAAACGGAGACGAAAGGGTGGGGATAGTGATTATGATGATGATGATGACGATGATAGTGATGATCAGGCAGATGAGGATGATGAGGATGAAGAGGACAAAGAAGATAAAAAAGGAAAGAAGGCGGAAGTTTGTGAGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000020542:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.903
Domain overlap (PFAM):
C1:
PF0334410=Daxx=FE(6.5=100)
A:
NA
C2:
PF0334410=Daxx=FE(20.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]