GgaINT0050419 @ galGal3
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38205931-38211457:-
Coord C1 exon
chr7:38211383-38211457
Coord A exon
chr7:38206175-38211382
Coord C2 exon
chr7:38205931-38206174
Length
5208 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TCCTTGTCATGTTTTTGAAGTCT
3' ss Score
5.25
Exon sequences
Seq C1 exon
TGAAATTGATAAAAATATTGATTATATGTCGAACTTGAGGAGAGATAAATGGATGGTTGAAGGCAAACTTCGGAA
Seq A exon
GTAAGTTTCATTTCCTGAAGTATCACTATGTATTGCTTTTTTGCATTTGCTCATATATGCTGCTATATGGTCTATTGATTCTAAGGACAAAAATAGCTGATTCCATTACAGGTTTACCAAGAAGTTAGTACCTGAACTACCTAATTCAGGTGGACATGAATTTAGAATGGTCCTGCACCGGTCTTTTATAACATGCTAAGGAAGAGGTTTTTGCCTCTCATAATTAGAGTTAAGTCCATTTTGTATTCTTTGGGAAAAAAAGTGAAATCTACTTTATTGGAATATTACAGGAGCTGTCATATTGTGATTGACATTATAAGTTTATTTGGACCTACCATACTTAGCAGTGTTCTTTCTGAAAGGCATTTTAAGACATGGTTTTCATGCAACCGTCACCCATCAAATTTTGCCAATTTATATTACATAATATTAACACTTCCATTTTATGTTTGTTACATCATTCCCTATACTTAGGGATCATCTCTAGCATGCAAACATTGAGATATTTCAATATTTTTATTTAAAATAAAATTGGAATTTTTAAAGGGTTCTTCAGCTTCATACCCACTGTTCTCCCATCCTACAAGACAAAATTCCATACAGCAAGCATAATGGCTCCAACTACCAGGAAGCTAGAAGGCATAAATTTCATGAATCACAGGTGGTAAAAATGTATAGCCAGACTCTACTTTCTTATTTCTTGGTCATCTTTACCTCTAACCAGGAACGGTGAATCCTTTCTTAACCCTTGCTTTAGGTACTTACGTTTCTAATCTTGTTTCTCCCTTTTTTCCCTTTAATGTATCTGCGAAGGAAGAAGGAAGAACTAAAGAAGAAGGACAAGAGGGAGGTAGAGGAAAAAATAAGACCAATAAAAAGAAATTCTCTACTAATAATGCAAATCCCCGTCTATGCAGGCTTAATGCATTTTATCTCTTAGGATAGTACACGTGCCTTTTCCTGTCTTCATCTGTAACCCTTCTGTGATTCTACGTAGTTCTAGAAGTGTCAGTAAAGTCCTATTTAGCCAATTATTCCTTAACAGAATGGGACCCTTGCCTGTCCTTGTCCCCCATGGGGCCACTTAATCTTTCTCTCCCTCCATCGAACTGTAAGTACTGGTAGATTAGAATCCTCCTTTTTCTTGTCATCTTTCTTTTCTTTGCCTTCAGATAGTGGGGAATAAGACCCTAAAGTCCCATGCTCCTCTTCATTTCTAAAATCATTTCTCTATTTCTTGCTTTTTCCCTTCCTGTGTGGATGTGAGGTAACAGTAGTGCTGATCCTACTGTGAAGTGTAAGTGTTGTGGGAGTGTTCTGAGACATTCTTTCCTTCTTTGAAGTCACTAGATTTGACTCATCTATCTCATCCTTGATTCAAAATCTTTGAATTTTTCACTTTTTTTCTGATGAACTCTCAGAAGCTTTTAAGAAAAGCCTTCACTGATCAGTTTAAAATAGTGCTCTCTTTGTATGTCAGATGATGATTTTTATAAACTCTTACAGCTGTTCTGGGGCTTCTCTGAAAAGGAACCTGTCCATTTAAGTCTTCTGTTTGATCTTTTTTCTGCTTCCAGGTTTTTGTATGTTGTCTTCCCCAATCATTTCAGAGCTCACTCTGGTTTTTAAACCTTCCAGTTCCAAATAGTTTTAGGAATATCTGGTCTGTTGACTACTTGCCATATGATCAATGGATGTGTACTCTTCTTATATGCACACAAACCTCTACATGACCCTCAAAACACAAACTCATATGTGGGAAATATGTAGTAGTAGAATAAAGGATACTGAGAAATGGATGTATTGCAACTCAGCCTGGTTTACCAGATTGTTTGTATATGCTGTGTAAATCATCATACCATGATGTCCAGGTTGCCTTAAAGTACATCCAAGTGAGATGAGAAGAGATTCTGCATGTGTCAGAAGATTTTTTTTGTCACGAACAGATTGTTTTTTATGCTTATGATCCAACTGTTGATGAGATTAGCTCCTCAACTGGATATGAAGAATATCAGAAGGAAAAGAAAAAAAAAAAATATATATATATATATGCACGTATACAGACACACACACACATGCACACACACACACACACAAAAAATCTCCATGTATGTTGATTTATAAAAAAAAAAAAACAACAAAACATTAGAATCCAAGGCTGAAAAAAGGCTCCTTGCAGGGAGGCCTTTCCCTTTCCCTATCCCTTTCCTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTGCTTGTTTTTGTTTCCTTTGAGGTTTTGAACTGAATTCATTGATAAGTATAATCATATTTATGGTCAGAAACTGAACTCTGATGTGCTTTGGCTTCTTCTGTGGAATGAGAGGTTGCCTCTAGAGCCTTCTCTTTTGCATTTAGGAGTGAATCTTGTTACAGTCAGCATTTTTGTAAAAAGTATCTGTCTCATCATATCAAATAATCTTTCTTTGTGCTTTCTATATCACAGATATTGTCAGAAGACTGTCTCACCTGAGATGATTTTATTACTAGATAATTGTAACTTCCGGTGTCTCCTCTTCCACTACATGCCTTCTTCTTGACATCTCTTTTGTCACTTGGTCAATGTAAAAAGCAATTTAAAGAAATGGAGCATAGCTTCTTTAAGGATAATACCTGTTTCTTTACGGAACTTTGAAATACTGCAGAAGATGATTTTCATTACAGCATTCTTTTTAACATGCCGGTATTATAGAATCATAGAATCACAAGGTTGGAAAGGACCTACAAGATCATCTAGTCCAGCCGTCCTCCCATTACCATTGCTACTACAAGCCACTAAACCATATCTCATAGCTCCTCATCCAGACGCCTCTTGAACACTGCCAGGGACTGTGACTCCACCACCTACCTGGGCAGGAGGTGGTGTCATACATCTTATAAGTTAATTACTCTCCAGTGAGACCATCTCAATTGTAAATGATGATAGTAAATCAAAAGCAGTGTTACCTAAGGGTAGGAATTATATCCTGATTTTGGATAGGAGGTAATTCTGATTTGGGAAACTTTCATTATTTGAGAGCTAAGAAGGATAATGTTAAGAGAATGTGATATTTAGAATTTCTTTTCCTTGCTATTTCCTGGTATTTGATTTTAGTACAGAAGTTATGATGAATGCTTAAAAAATAAATCAGAAGGTGAATTTTTCTTCCATGATCTGATGAGCGTTACAGGTTAGGAAGAGCAGGCGTAAGTCACATATCTGAGTATCGCCTACTGTTTTGTGTACTGGACTTCACAGCATCCTTTATGGTTACAGAAGTCTTTCTGGTCTTTATGTGAAAGGAAAGATGAGTGAAAGAAAGTTTTTTGAGTGAAGGTTTTCTTCTGTTGGCCATACACCTAGGTAGTAGCAAGAAAATCATGCCACACTTACAAATCTGAACATTTTTTCTAAGTTACGTTCTCATTGATTTCTACCTCTACACAACTTTGTATAAAAAGAGCTGCTTTCTGACGCTTGTGTTGTTACAAAAAGAGGGCATTTCTGATTTATTTCCATTCCTACTTGTAGTGTCGTGCAAGCTTCCTTTGGTGCTTTCCAACATTGTATCTCTATTTTCAGCTCTAGCAAAAGTAGCTTTTTTCATTTGTTATCATTTATTTTAGATGTATGAATGAGTTGTGTTTCCTGATCACTGAGCTTCATCTGCTTACTCACTTCATTTTTAGTGAATTGTCTTCCAGATTATCTCAATCTTATTTGTCTCTAAAATTGCTCCACCACACAGCATTCAATCCAGTTGCTGACGAGTGGCTTGGTTTGATTACCGTACGGATGATTACTGTACATAGGTACAAGTTTCCAGTCCAGCTGAACAGGACTTGATAGTGTGAAGTTACCGTAGAAAAAAGTAAATCTTCTAAAAAAAATTAACTCGACAGACATCTCAGAGGGACTCAGTGAGCTAAGGCTTTTTGTACCAGAACTGAAAATAGTACTTGCTTCCAAATTCACTGGAAGGCTTGGGAAATTTTTTATCCAGAATATAATAAATTACTAAAATAGTTGTAAGAGGGCTACTACCAGTTGAACAGTGACAACTTCATTAAAATCTGTGCTGTTTGGTACTGGCGTGGTTTTATCAGCGTTATAAAAAGCTGATACTTTTGTCAGAGTACATCTATCAAGAAGCCAGTACTTTTACAACACTCATCATATTTGTAGCCACTTGCTGTATGGAATATTGTGTTGTAGGATGGGAAGAGAGAGAAGTATGACAAGGGAGAATTACGTGCTGGTAATTGTGTTTGTCGTTACCGTTCTACTTTTCCCATCCTACCTTCTTCCAGCCATCTCTTACAAAATCTTTGTCTTCCCTACACGTTTATGAATCTCTTCTGAGTCAGTTGCATTTTTTGGTCTGCATTATAAGTGATTAGGCCTGGCTATCTATACCTCCTGCGATTCAGCATGTTTGCCTGCTAGCTTCCTGATAGGTGGAACTGTAATTTTTGCTGTGTGGGATCTTGTCTTATAGGGTTTTTATAGAAGAAGAAGGTCTACAACAACTATAATTACTGGTATGTAAGTTTCCTTTTTCTTTCATAAAAGGAAAAATAAGGATTTGATTGAATCTCCTAATAGTTTAGGTAACCATGACTTCTCAAAGAAGAAAATATGTCATACAATGGAAAGATCAGCCAAAGGCCTGTGCTAAAGGGAAATAATATATAATAACTAAATAATAACTAAAAAAAACCCACAAAAATCTGAAATGAAAAAAATTACTTTGAAACCAACCTTGCTGTTGCCATGCAAATACAAAGAAATTCATACGTTCAGCTTAGGATTTTTCCTCCCTTTTTTTCTTCGACAGCTGTTTCATAAAGATACTCTTAACTGCATAAAACAGAGGCCAAATAGTTCTTTCTTCTAATTGTCTTTCCTGACTTTTCTATAACACTCTTGTATTCCATTTTTTTAAAATGATTACGTGATAAAATTTACCTGGAAGAAACAGTAATTCTAGGCAGAATTGGATAAGAGGTTTAAGGGCTTTCTGTAACCTGTTTTTTTTTTTCCTGTTGCTTAATGGCAATAAACAGGTAATAAAATGTAGAGCATCATAGAACAGAAGAGCTAATTTGACATAAAATGATTCACTTTTAATCACACAGGAACAAAGGTATGTTTGTGCTACAAATAAGCTCCATAATTTCACTCCTTGTCATGTTTTTGAAG
Seq C2 exon
TCTTAGAATCATTCATGCCAAAAAAACTGGCAAAAGAGATGCTACAGGAGGTGGTGAAGTAGGAGAGGAGCCGCATTCTTTGGAAACACCAACACCAGGCCGCAAACGGAGACGAAAGGGTGGGGATAGTGATTATGATGATGATGATGACGATGATAGTGATGATCAGGCAGATGAGGATGATGAGGATGAAGAGGACAAAGAAGATAAAAAAGGAAAGAAGGCGGAAGTTTGTGAGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000037699:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.902
Domain overlap (PFAM):
C1:
PF0334410=Daxx=FE(6.5=100)
A:
NA
C2:
PF0334410=Daxx=FE(20.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]