MmuINT0024152 @ mm9
Intron Retention
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59758352-59760274:-
Coord C1 exon
chr2:59760200-59760274
Coord A exon
chr2:59758596-59760199
Coord C2 exon
chr2:59758352-59758595
Length
1604 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GTGCCTTCTGATGTTTAAAGGCT
3' ss Score
5.89
Exon sequences
Seq C1 exon
TGAGATTGACAAGAACATTGAATACATGTCTAACTTGAGAAGAGATAAATGGATGGTGGAAGGTAAACTCCGCAA
Seq A exon
GTAAGTTAATGTGCTGTCATGCTGGTAGTGTGAGACTCCTGGAGGCTGGTGGGCTGGAAAGATGGAATTTAAACTCTTTTGACCGGAAAGATAGTACTTAATCTGGAATAGTAAACTAACGATGGAATCTACAACTAATAAAACTTTTGTTCAGAGTCTATAGCCGACCAAAAAAAAAAAAAAGGGAATTAGATTTATTGAATTCATGCTTCAAACATAAAAGAGGTCTTTCTTTCTTCTTTTTTTTCCTCTCTGAAGGAGACCATGTTTTCCACTATTGTTGTCGCTACCATATTGCTTTTGTCTTACTAATGCCTGAGACTATCCTTTTTATTAGTGAGTTTATTAAAACTGCCTCTACAAAATCTAAGAACAATTATTCAACATTAACATTTAATTACTCTCCAGTCAGGAACCAGTACATTTATTAACTGTAAAAGGGAATCGTTCTCAAAGATTATGATGTGAGCCTATAATCCCAGCATTTGGAAAGCTGAGGCAGGAAAATCCAGAGTTTAAGACCAGCCTGGGTTACATAGCGGTACCTGTTCCCAAATGAAAACAAACAATCAGAGGCAGAGCAGTTGAGAGCCAGCAAGATGGCTCAGTGGTTGGGAGTGCTTAGTGCACTTGCAGAGGACCTGAGTTCAATTCCCAGCACCTCCATGGTGGTTTGCAGCCATTTGTAAATCCAGTTTCAGGACACCTGTGCCCTCATCTGTCCTCTGTGGGTACCAGGCACTCAACGTAGTGCCCATGCATACATTCAGGGAAAACACATAAAATGAAAACTAATCAACTGAATGTTTAAAAAGATTACAAGATGAGTTTCTTTGCAGTAATTTGAACTGGAATTTAGTCAGGCACACAGTATAGAAATCAGGAAGAATTGGGGGGCTGGAGAGATGGCTTGGTGGTTAAGAGCCCTGGCTGCTCTGCCAGAGGTCTCTGATTCGGTTCCCAGCACCTACAACGACAGCTCAAAACCGTCTGTAACTCCAGTTTCAGGGAATCTGACACCTTCACAGACAGACATTCAGGCAAAATACCAATGCAAATGAAATTCATAATAATTCATAAAAATATTAATGAATTATTGGAAAAAGAAGAAATTAGGAAGTATCATTTGAACATTGATAGAGATATTCATCTCAGCTTTCAGAGTTTTGTTGGTCTAATGTCTTCTAATTACCACAAGGTGATTCATAGAACTTTATATATTCTGTAACTTGTGGAAACATATGTCTTAATTTTTCTTATACTTTTTTTTACTGCCATTGATATATTGCTGAGTACCGTTTTTTCTTAAGACTAAGCTTATCATGTGGATGTGTCACTGCTTGTCTGTAATCCCCGCACTTAGGAGGAGAAGGCAGGAGGATCACAAATTTCTAGGCCAGCTAACCTACTAAGTAAGACTCAGTTAAGACGCCACGTCCTGGTGGGGCATGCATCTTAGTGGTTGATGACTAAGAAGCAGTGAGTTGAATCCTCAGTACCTCGGAAAGAAGGGAAACAGAAAGCATTGGCATTGACCGCATGAGAATTATGATCTTAACGGGGGCAAGAGAACCTTTTTATTCTGTGCCTTCTGATGTTTAAAG
Seq C2 exon
GCTTAGGATAATTCATGCTAAGAAAACAGGCAAGAGAGACGCCTCAGGGGGCATTGACCTCGGGGAAGAACAACACCCCTTGGGCACGCCCACGCCAGGACGCAAGCGGAGAAGGAAGGGAGGGGACAGTGATTATGACGATGATGACGATGATGACAGCGACGACCAAGCTGATGAGGATGAGGAAGATGAGGAAGATAAAGATGACAAAAAAGGAAAGAAGACCGATATCTGTGAAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-Baz2b:NM_001001182:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.854
Domain overlap (PFAM):
C1:
PF0334410=Daxx=FE(6.5=100)
A:
NA
C2:
PF0334410=Daxx=FE(21.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATTGACAAGAACATTGAATACA
R:
CTCATCTTCACAGATATCGGTCT
Band lengths:
319-1923
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: