DreINT0036874 @ danRer10
Intron Retention
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11743066-11743513:+
Coord C1 exon
chr6:11743066-11743140
Coord A exon
chr6:11743141-11743290
Coord C2 exon
chr6:11743291-11743513
Length
150 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TTTACTTTCATTCGATGCAGAAT
3' ss Score
8.69
Exon sequences
Seq C1 exon
TGAGATCGACAAAAGCCTGGAGCACATGAACGTGCTGAGGAAGGACGAGTGTATTGTGGAGGGCAAATTGAAAAA
Seq A exon
GTGAGTCCATATATTTAAGTCTAATTTACACAGTAACGGTTTTATTTCAAACAAGCCCACCTGGCTTTTTAATAACTATGTATTGGTAGCACGTAATATAAAGATACATCATTAACCAGTCTATTCGGTCTTTACTTTCATTCGATGCAG
Seq C2 exon
AATGAAAACAATCTACGCAAAGCGGACAGGGAAACGGGAATCAATGACTGGAGGGGAGGAGCCTCACGCTGCCGGAGGCTCTGCCATCGGTCACAAACGCAAGAGGAAGGCGGGCGATAGTGATGATGACGATGATGAAGATGAGGACAGCGATGAGGATGAGGATGATGAGGAGGAGGAGGAAGAGACTAAAAAGGGAAGGAGGGTGGAGACATGCGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782:ENSDART00000151044:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAGTGTATTGTGGAGGGC
R:
GTCTCCACCCTCCTTCCCTTT
Band lengths:
245-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]