BtaINT0025093 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37108091-37109009:+
Coord C1 exon
chr2:37108091-37108165
Coord A exon
chr2:37108166-37108962
Coord C2 exon
chr2:37108963-37109009
Length
797 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TTTTTTTTTCCTATTTAAAGGCT
3' ss Score
8.58
Exon sequences
Seq C1 exon
TGAAATCGACAAGAACATTGATTATATGTCAAACTTAAGGAGAGATAAATGGGTGGTAGAAGGTAAACTCCGCAA
Seq A exon
GTAAGTCCTATTTTATTAAAACTAATATACTGTTTTCCTTCTTCACAAATTTCTGAATAAAGCATACTAAGTGAAAATATGGAATTTAAACTTTATCTTGTCTAAAAATTAGAAAAGGCAAAGTTTAATTAAGCTGAGATATAAAATTAATAAAACTCAGAGGCAGAGTTTTCAGTGGACAAAAGCTATATTGAGATTCATTGAACTCACATGCTTCAAAGTTAAAAGAAAGTCAATTTATCTTTCTTTCAAAGAAGTCAAGCAATCATATATTCAAAGATTGTTGTTTCTATCAGGTTACTTTTGTCATAAATAGAATCTGTTTGGATTCTACCATATTTTTCCTTAATTGCTTTCTAATTACAGTTTGCTTTTACAGAGAGTCTAACATATCCAAATATATTCAGCATTAAAACTCAATTAGCTTCCTGCTAGGAAATATAATGCTGAAATTATTCAACTTCCATGTTAAGAGGATAGTTTCTTTGCAGTGACTTGAATTGAAATTTACTCAGTCAGATAGGATCAAGAACTATCACTTGGCTGTTCCTGAGTTAATCTCAGTTTTCTGTGTTTTTAAAAAAATGTATTCTAATTCCAAAGAGATAGACAGTATAATTCTTAAAAGTTAACATATTTTATAATTTCTGTGAACATATTTCTTCTAATTTTTATTGTCATTGATATATTGGTTACTTTGAGAGAAATAACCACATGCTTAAAATTCATAGTATGATATTTAAAAAGTACAGAGGGAAGCCTTTTCTTCTGTATCATTTTTTTTTTCCTATTTAAAG
Seq C2 exon
GCTCAGAATCATTCACGCTAAGAAAACAGGCAAAAGAGACACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654:ENSBTAT00000027534:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.602
Domain overlap (PFAM):
C1:
PF0334410=Daxx=FE(6.3=100)
A:
NA
C2:
PF0334410=Daxx=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]