RnoINT0024828 @ rn6
Intron Retention
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45991909-45993794:-
Coord C1 exon
chr3:45993720-45993794
Coord A exon
chr3:45992153-45993719
Coord C2 exon
chr3:45991909-45992152
Length
1567 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CTGTCTTTTGATGTTTAAAGGCT
3' ss Score
7.03
Exon sequences
Seq C1 exon
TGAGATTGACAAGAACATTGAGTACATGTCCAACTTGAGAAGAGACAAGTGGGTGGTGGAAGGTAAACTCCGCAA
Seq A exon
GTAAGTTAATGTGCTGTCTTCCTGGGAGTGCCAGGCTCCCGGAAGCCTTGTGGGCTGGAAAGATAGAATTTTAACTTTACTCTCTTGACCTGAAAGATACTCCTTAATCTGGAATAGTAAACTAATGATAGAATCTACAGTTACTAAAACTTTGGATTAAGGGTCTATAGCAGACAAAAGTAATAATAGAATAGATTCACCGAACTCACGCTTCAAACAAACGCTTCCTTTTTTCTCTCTGGAGTCGAGTGACCATGTTTTCCACTATTGTTGTTGCTGCCACATTGCTTTCATCTTAACTAATATCTGAGAATATTCAGCTTTTTTTATGAGTTTTTATAAAACTACTTCTACAAAAATCTAAGAACAATTATTCAACATTAAAATTTAATTATGCTCCATTCAGGAAGTAAATAAGAGTATATTTATTAACTGTAAAAGGGAAAAGTTCTCAAAGCATATGATGTGTACCTGGAATCCCAGCGCTTGGAAAGGTGAGGCAGGAAGATCCAGAGTTTAAGACCACCCTGGGCTACATAGTGGTTTCCCTTCAAATTCAAACAGCCAACCAGGCAGAATAGGTTTGGGGCTAGAGAGATGACTCAGTGGTTAGGAGTGCTTCAGTGGTTAGGAGTGCTTATTGCTCTTGCAGAGGACCTGAGTTCAATTCCTAGCACCTACATAGTAGTTTTCAACCATTTGTAAATCCAGTTTCAGGATACCTGATGCCCTCTTCTGACCTGTGGGCACCAGGTACTCGAGTAGTGTACATGCACGCATTCAGATAAAACACATAAAACAAACATGAATAAATTTAATTTAAAAAAAGATTTCAAGATTAGTTCCTTTGCAGTAATTTGAACTGATATTTAGTCAGGCACACAGTATAGAAATAAGGAAGAATTAGGGGCTAGAGAGATGGCTCAATGGTTAAGCCCTGCCTACTCTTCCAGAGGTCCCTGGTTCAATTCCCAGCATCAGCTCTGAGTTATAGCTCAGAACTGTAACTCCAGTTCCAGAGGAACACAGATAGAGATGCAGGCAAAATATCAATGCAAATGAAATAAAAATATTAATGAATTATTAAAAAAAGAAATTAGGAAGTATCATTTGGACATTGTTGGAGTTATTCATCTCAGCTTTCAGTTTTCTAGGTCTACTATGTTCTAATTACCAAAAGGTATTCTTGTGGAAACATATGTCTTAAATTTTCTTAACTGATTTTTTTTCCTGCCATTGATATATTGCTTGCCATAGGAGTACAGTTTTTTCTTGTTTCACTCAGATTGTGATCTGGATGTGTCACTTGTAATCCCAGCACCTAGGAGGCAAAAGCAGGAGATCACAAATTCTTAGGCCAGCTGAGCTACTAAATTAGACTCAGTTAGGACACTTAGTCCTGGTGGGGCCTGCACCTTCGTGGTCCATGATTACCTAAGAACCGGTGGGTGGGATTCTCAGTACCTACAGGAAGAAGGGGAACAGAAAGCCTAGCATGGAGCTCATAACAATTATGATCTTAACAGGGGCAAGAGTAGCTTTTTATTCTGTCTTTTGATGTTTAAAG
Seq C2 exon
GCTTAGGATAATCCATGCTAAGAAAACAGGCAAGAGAGATGCTTCAGGGGGCATTGATCTTGGGGAAGAGCAACATCCCTTGGGCACGCCGACTCCAGGACGCAAGCGGAGAAGGAAGGGAGGAGACAGTGATTATGATGATGATGACGATGATGACAGCGATGACCAAGCCGATGAGGATGAGGAAGATGACGAAGATAAGGATGACAAAAAAGGAAAGAAGACCGATATCTGCGAAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984:ENSRNOT00000081302:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.854
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATTGACAAGAACATTGAGTACA
R:
TCATCTTCGCAGATATCGGTCT
Band lengths:
318-1885
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]