GgaEX0019960 @ galGal3
Exon Skipping
Gene
ENSGALG00000013254 | LOXL3
Description
NA
Coordinates
chr4_random:109216-111872:+
Coord C1 exon
chr4_random:109216-109427
Coord A exon
chr4_random:109895-109948
Coord C2 exon
chr4_random:111813-111872
Length
54 bp
Sequences
Splice sites
3' ss Seq
GCCACGGTGTTGCCCTGCAGGCG
3' ss Score
8.1
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ACGGAGCAGAGCCACGTGGAGGAGGTCCGTCTGCGCGCGGTGGTGTCGGGGGCACAGCGGCGGCTGCCAGTGACAGAGGGCATCGTGGAGGTGCGCTACAAGGATGGCTGGGCACAGATCTGCGATGAGGGCTGGGACAGCAAGAACAGCCACGTCATCTGCGGCATGATGGGCTTCCCCACTGAGAAGAAGGTGAACAGGAACTTCTACAA
Seq A exon
GCGGCTGAAGCGTGCAGCCAGGACGAGGGGCCGGAGCATGAGGCCAGGCGGGAG
Seq C2 exon
GCTGGCCTCCAAATCTCAGCCTAAACAAAAGCGCAGGGAGGACGTAGGGTCCAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013254-'2-3,'2-2,3-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.014 A=0.684 C2=0.952
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(50.0=73.2)
A:
PF0053013=SRCR=FE(14.8=100)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGCGCTACAAGGATGG
R:
TAGGCTGAGATTTGGAGGCCA
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event