GgaEX0019961 @ galGal3
Exon Skipping
Gene
ENSGALG00000013254 | LOXL3
Description
NA
Coordinates
chr4_random:109216-112289:+
Coord C1 exon
chr4_random:109216-109427
Coord A exon
chr4_random:111813-111872
Coord C2 exon
chr4_random:112070-112289
Length
60 bp
Sequences
Splice sites
3' ss Seq
GGTTGTTTTCTGTTTTCCAGGCT
3' ss Score
8.65
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ACGGAGCAGAGCCACGTGGAGGAGGTCCGTCTGCGCGCGGTGGTGTCGGGGGCACAGCGGCGGCTGCCAGTGACAGAGGGCATCGTGGAGGTGCGCTACAAGGATGGCTGGGCACAGATCTGCGATGAGGGCTGGGACAGCAAGAACAGCCACGTCATCTGCGGCATGATGGGCTTCCCCACTGAGAAGAAGGTGAACAGGAACTTCTACAA
Seq A exon
GCTGGCCTCCAAATCTCAGCCTAAACAAAAGCGCAGGGAGGACGTAGGGTCCAGGAAGAG
Seq C2 exon
GCTGTTTGCGGAGCGGCAGCAGCTCAACTACCGCCTGCACTCAGTGTCCTGCACAGGGACAGAGGTGCACATCTCCATGTGCACGTTCCAGTTCTACCGGGGCAACTCCTCAGCAGCCTGCAGCACTGGCATGCCCGCTGTTGTCAGCTGCCTGCCCGGGCCCCTCTTTGCTACCAGCAGCACCCAGAAGAAGAAGCAGCGCCAGCAGCAGCAGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013254-'2-4,'2-3,4-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.014 A=0.952 C2=0.176
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(50.0=73.2)
A:
NA
C2:
PF0053013=SRCR=PD(49.0=68.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACAGCCACGTCATCTGC
R:
GAGATGTGCACCTCTGTCCCT
Band lengths:
146-206
Functional annotations
There are 0 annotated functions for this event