GgaEX0020261 @ galGal3
Exon Skipping
Gene
ENSGALG00000013606 | FGL1
Description
NA
Coordinates
chr4:64695394-64699674:+
Coord C1 exon
chr4:64695394-64695445
Coord A exon
chr4:64696833-64697018
Coord C2 exon
chr4:64699599-64699674
Length
186 bp
Sequences
Splice sites
3' ss Seq
ATTTGCCACTTCTCTGATAGCTA
3' ss Score
6.55
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
TGCATCAGCTTAAGAAGGTCTAACAGCTTTGCGTTCTTTCCAGAGGATAAAG
Seq A exon
CTATCCTGGCCTCTCAATGAATCTGCTGTGATTGTAATTGTGGGATCAGATAACCACAGAAATTTATATCCAGTGAGAAACTGGCTCAAAGATACAGGGTACTTCAAGATCCAGTGCTATTCATGCTTATTGATCTCTTCTGGGTCTCTCCGCCGGGCAGTTACAAAAGCAGAGGAACAATGCTAG
Seq C2 exon
CTTTGAAAGAATGAAGATTTTGATAGTGATTGATTTTCTCCTTGCAGCTAGCCTGACATCTGCCACTAGGAGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013606-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATCAGCTTAAGAAGGTCT
R:
AGCTCCTAGTGGCAGATGTCA
Band lengths:
126-312
Functional annotations
There are 0 annotated functions for this event