GgaEX0020261 @ galGal4
Exon Skipping
Gene
ENSGALG00000013606 | FGL1
Description
Gallus gallus fibrinogen-like 1 (FGL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001277819]
Coordinates
chr4:62461902-62466427:+
Coord C1 exon
chr4:62461902-62462198
Coord A exon
chr4:62463586-62463771
Coord C2 exon
chr4:62466352-62466427
Length
186 bp
Sequences
Splice sites
3' ss Seq
ATTTGCCACTTCTCTGATAGCTA
3' ss Score
6.55
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
TTCTGAGACCAGTTTCTTGGATCACAGCAGTAAAAGAAAATGAATGATTGTTATTTTTGTCAATTTTTAATTCAGAACTGCTGTGCTAGGCAAAGAATTATCATCTTCTTATGTTGCAATCAGTCTTGAGAACTGCAGCTCCTCAGTAACATTCCTGCCCACTGACTCATAGCAGATGTAAGCCTCAGCACTACAGAATTTAATAGCAAAAACAATCGCAGTCTGGGAAGGGACCTGGAATTCTTTGCATCAGCTTAAGAAGGTCTAACAGCTTTGCGTTCTTTCCAGAGGATAAAG
Seq A exon
CTATCCTGGCCTCTCAATGAATCTGCTGTGATTGTAATTGTGGGATCAGATAACCACAGAAATTTATATCCAGTGAGAAACTGGCTCAAAGATACAGGGTACTTCAAGATCCAGTGCTATTCATGCTTATTGATCTCTTCTGGGTCTCTCCGCCGGGCAGTTACAAAAGCAGAGGAACAATGCTAG
Seq C2 exon
CTTTGAAAGAATGAAGATTTTGATAGTGATTGATTTTCTCCTTGCAGCTAGCCTGACATCTGCCACTAGGAGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013606_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAACTGCAGCTCCTCAGT
R:
AGCTCCTAGTGGCAGATGTCA
Band lengths:
245-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]