GgaEX0021728 @ galGal3
Exon Skipping
Gene
ENSGALG00000014859 | ZNF131
Description
NA
Coordinates
chrZ:13036429-13037689:+
Coord C1 exon
chrZ:13036429-13036505
Coord A exon
chrZ:13036676-13037084
Coord C2 exon
chrZ:13037237-13037689
Length
409 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTGTATCGTTCTCAGGCT
3' ss Score
9.16
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
CCTTTTCAGAGTTCTTGATGCACTAAACTAGCCCTTTCCTGCTTGTGTGCATGCTTCACTGAAGTCCAAAATACAAA
Seq A exon
GCTACTCATCTCTGTGCCAGCTGAAGGGAAGGAATTGTGCTCAAAATAATGTGTCTGTGGTCTAGGCAGTATTTCTAGCTGGGCAGGACTAACATGGATTTAGTTTTAAGAGATCTTCATCAACAGAGATGTTTTTTTGAAATGACAGAATGTGAGAGTTTAACCTAGCTAGTTAAATGTCACAGTGCTGTGATCAGAATCAGCTAGAAGTCCTGCATGTAGAACTTCACTAACAGGAATTTCTGCCCACAATTCTAGCACCAGACACTTAGTGGGACATGCTTCTTTATCTGAATTTCACATAGAGTTGAAATAAGCGGAATTCCAAGTCCCGTACTGACTGATAAATTTGGTAGCACCTGGAAGTGACACAATTTTTCTTAATAACAGCTACTCTGTTGATCTGAAG
Seq C2 exon
GTTTGTAACAGCGTGTTTAACAGCTGGGATCAGTTTAAAGATCACTTGGTAATCCACACTGGCGACAAGCCCAACCACTGTACTTTATGTGATTTGTGGTTTATGCAAGGCAGTGAGCTGAGAAGGCATCTAAAAGACACACATAATATTTCAGAACGACTAGTGACAGAAGAGGTTCTCCCAGTGGAAGCTGTGGAAGGTGAACCAGTAACATCAATGACCATAATAGAACAAGTGGAGCAAGTTCATGTCCTACCAGTAATTCAGGTACAAGTAGATCCTGCACAGGTAACTGTGGAACAGATGCACCAGGATCTCATACAGGACAATCAAGTGAAAGGCACACAGATGGATGAAATGCAAGAACAGGTGCAAATTAGTTACCTGGAAGTGGAGCACATGCAAACTGAGCAAGGTGCTGAAGTTCACGTGGAGCAGTGCATGAATCCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014859-'9-10,'9-9,10-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.179
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF128742=zf-met=PD(79.2=12.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCTGCTTGTGTGCATGC
R:
CTGGTGCATCTGTTCCACAGT
Band lengths:
356-765
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]