GgaINT0061870 @ galGal3
Intron Retention
Gene
ENSGALG00000014859 | ZNF131
Description
NA
Coordinates
chrZ:13036055-13037689:+
Coord C1 exon
chrZ:13036055-13036185
Coord A exon
chrZ:13036186-13037236
Coord C2 exon
chrZ:13037237-13037689
Length
1051 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CACTGTGTCTTTTGTTTCAGGTT
3' ss Score
12.34
Exon sequences
Seq C1 exon
GTGAAAAACCATTTGAATGTCCAAACTGCCACGAACGTTTCGCTAGGAATAGCACACTCAAATGTCACTTGACAGCATGTCAGTCTGGTGCTGGAGCTAAAAAGGGAAGGAAGAAGCTGTATGAATGTCAG
Seq A exon
GTGAGTAATGAGGGTTGCAGAGTATGAGGCTGGACACCTCCAACCTGTATTGGGATTGTGGGTATACTAAGCAGGGAAGGCAACGGGAGTAGGCTTGTGTCAACAAGGACTGCTTTTATTACAATTAATACAAGAATCGCATTCAACCATGACATGCAGATAAATTCTATATCTAGATAGTCCCATTTAAAATGCAGCATTATTGATGTGAGGTTTCATAATATTTTCTTATTATTTCTGCAGCCTTTTCAGAGTTCTTGATGCACTAAACTAGCCCTTTCCTGCTTGTGTGCATGCTTCACTGAAGTCCAAAATACAAAGTACAATCTAATTTCCTATTTTATTATTCTTCTGTTTGATACTCATTATGTTGACTTTATCCGTAAAGTCATTCTATCTTATGATGACAATCCATAATATCTTTTAAGCCAATATAGATTTTGTAGATAGATGTACTCATTTCTGCTGTGTCTTTTTGTATCGTTCTCAGGCTACTCATCTCTGTGCCAGCTGAAGGGAAGGAATTGTGCTCAAAATAATGTGTCTGTGGTCTAGGCAGTATTTCTAGCTGGGCAGGACTAACATGGATTTAGTTTTAAGAGATCTTCATCAACAGAGATGTTTTTTTGAAATGACAGAATGTGAGAGTTTAACCTAGCTAGTTAAATGTCACAGTGCTGTGATCAGAATCAGCTAGAAGTCCTGCATGTAGAACTTCACTAACAGGAATTTCTGCCCACAATTCTAGCACCAGACACTTAGTGGGACATGCTTCTTTATCTGAATTTCACATAGAGTTGAAATAAGCGGAATTCCAAGTCCCGTACTGACTGATAAATTTGGTAGCACCTGGAAGTGACACAATTTTTCTTAATAACAGCTACTCTGTTGATCTGAAGGTAACTTCTCAGCTTTTACCTTGGACATGTGTTGGCTTTTTTTAAATCTATGTCTCAAGAAGCTACATTGTGTAAAGCCTGGGCTGAAGTAGGCATTATACTTTGGCATATTTCTGTTGGCACGGTTATACTCACTGTGTCTTTTGTTTCAG
Seq C2 exon
GTTTGTAACAGCGTGTTTAACAGCTGGGATCAGTTTAAAGATCACTTGGTAATCCACACTGGCGACAAGCCCAACCACTGTACTTTATGTGATTTGTGGTTTATGCAAGGCAGTGAGCTGAGAAGGCATCTAAAAGACACACATAATATTTCAGAACGACTAGTGACAGAAGAGGTTCTCCCAGTGGAAGCTGTGGAAGGTGAACCAGTAACATCAATGACCATAATAGAACAAGTGGAGCAAGTTCATGTCCTACCAGTAATTCAGGTACAAGTAGATCCTGCACAGGTAACTGTGGAACAGATGCACCAGGATCTCATACAGGACAATCAAGTGAAAGGCACACAGATGGATGAAATGCAAGAACAGGTGCAAATTAGTTACCTGGAAGTGGAGCACATGCAAACTGAGCAAGGTGCTGAAGTTCACGTGGAGCAGTGCATGAATCCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014859:ENSGALT00000023979:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=34.1),PF128742=zf-met=PU(12.5=6.8)
A:
NA
C2:
PF128742=zf-met=PD(79.2=12.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCTGGAGCTAAAAAGGG
R:
CTGGTGCATCTGTTCCACAGT
Band lengths:
358-1409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]