MmuINT1035485 @ mm10
Intron Retention
Gene
ENSMUSG00000094870 | Zfp131
Description
zinc finger protein 131 [Source:MGI Symbol;Acc:MGI:1919715]
Coordinates
chr13:119765187-119768836:-
Coord C1 exon
chr13:119768706-119768836
Coord A exon
chr13:119767027-119768705
Coord C2 exon
chr13:119765187-119767026
Length
1679 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
ACTATATTTGGTGATTTCAGGTC
3' ss Score
6.2
Exon sequences
Seq C1 exon
GTGAAAAACCTTTTGAATGTTCAAATTGTCACGAGCGGTTTGCTAGAAATAGCACTCTCAAATGTCACCTCACTGCATGCCAAACTGGAGTAGGAGCAAAAAAGGGCAGGAAGAAGCTTTATGAATGCCAG
Seq A exon
GTATGTGTGGGTAGATTGTCTTCACACGAGGAGCGGAACTACAGCCAGAAGTGCAGAGTAAATAAAATGGGGTTGACTGAGAAGTTTTTGACAAGACATTAATGTATAAAGCCGTATGTGTTCGGTAGAAACCACTTCTGGAATTTTGAAATCTGATCTTTTCCTGAGTTAGTGAAACCCAGTAGGATCTTCTCGTGACACTGGGCAGTAGCAAGCCTCAGCTCCTAGCTAACCATGCCCACAATGCTAAACAAAACCAACACTCATTACGGCGCCCCAGAACAGCCATGAATATGGGCCAAAACAAAATTGTGAATTCCTTAATCATTGAGGCATTGAGGGTTTTATTTATTTATTTATATTTTAACTTGGACAGTTCTTGAATGTGAACTTTGGAGATGACAGTGTCCTGTTGCAGTGTCAAAGGTTTGGACATGCCTTCCGTTCCTGTAGTGTGGATAGGTTAGGTGCGGTAAATGCCCTTTGGACACAACATGGCAGTGGTGTATCAGCATCTCAAGCAAGCTAGAGCCTTAGAAAGACTTGAAAATAAATGTTTTATATGGGTTATCAGCAGCCCGAGATGATCAATGTTGATAAAACTGTCTTAAACGGAAGTGCAGGTTTGTTAGGTGGTTTTCCTTTTTTCCTTTCTTTTTTTCTCTTTTCTGTTCTTTTCTTTTTCTTTTAGGGAGTCTGTCATATCCCAGGCTGGCCCTTGAACTGACTTTTTAGCTGAAGATGACCTTGAATTATGATTTTTGTCCTGTCTCTTACCTCCCAAATGCTGAGGCGTGCACCACCACACCTGGTGTGGGGGAATAATAGGTTTGGGTGTTTGTTTGTATTTATTTACTAATGGCTATGCGTGTGCATCAGAGGATACTTTGTAGGAGTTTGTTCTTTTTTCACTATGTGGGTTTTCGAGATTGAGCTCGGGGATTGTGCCCGGACTTGGGGCAAGTGCTGCCTTTACCTGTTAAGCCCCCTCACCTGCCTACAATTAATTATTTTTAGCCATATGAACAATCGTTGGTTTCTGGGAGAGGGGCAGAGAAGGCAGAAAAGATACAACTGAGTTTTCCATGATTAGTATATTTTTTGTCCCAAATAGTGTAATGGGTCTAAATCTTGAGACTGGGATAAGCTATGATATTGTTACTTTATATTTGATACTTAACAGGAGCAGTGCTGGAATGTCCCCAGAATTTAGTCAGTTGTTAGGGTATGGGCGGAAAGATCAAATGAAACCAAGTGTGCGAGATAGCTTTGCACTAGATGCCCTGGAAACTATAGTTAAAATGGTTATGTGATAACTACCAATGTGAATGGTAGTGTTCTGTGCTTGGTTGGTTGGTTTGTTTGTTTCCTGGTATTGGGGATTAAACACAGGACCCCCACCCCCATATGCTAGGCAGATATTCTTACCACTAAGTTATACTTTCAATCCGTATTAGTGTATTCTTTGTGGGGATTTCTTCATTGGTGGTTTTTGTTTTATTTTGTTGTCCTATTTGTTGACACTTAGGATTAGAACCAGTACAGGGCCTTGTGATTGCTAGGCAGATACTACTGAGCTAACTTCAACCAGTCTGTGTATTTTATGGGGAATAAGTGTATTCACATTTACTTTGGTATGATTATAGTTATTATTGACATACTATATTTGGTGATTTCAG
Seq C2 exon
GTCTGTAACAGTGTATTTAACAGCTGGGACCAGTTCAAAGATCACTTGGTAATACACACTGGAGATAAACCCAACCATTGTACTCTGTGTGACTTGTGGTTTATGCAAGGAAATGAATTACGGAGGCATCTTAGTGATGCTCACAATATTTCAGAGCGTATAGTAACTGAAGAAGTCCTTTCAGTAGAAACACATTTACAAACCGAGCCAGTGACATCAATGACTATTATAGAGCAAGTTGGGAAAGTGCATGTGTTGCCACTGCTTCAGGTCCAAGTGGATTCCGCACAAGTAACTGTGGAACAAGTTCATCCAGATCTGCTCCAGGACAGCCAAGTGCATGATTCACAAATGACCGGGCTTCCAGAGCAGGTCCAAGTGAGTTATCTGGAAGTGGGCCGAATTCAGACTGAAGAAGGCACTGAAGTACATGTTGAAGAGCTTCACGTTGAACGGGTAAATCAGATGCCAGTTGAAGTACAGACTGAGCTTCTAGAAGCTGACTTGGATCACATGACCCCTGAAATCATGAGCCAAGAGGAGAGAGAGCCTAACCATGCAGATGCTGCCATGGAAGAACACGAAGATGCTGAGGGGTTAGAGACCAAACCAAGCGAGTATTCCCAAGCTAGAAAAACAGAGAATGACAGGACATCTCTGCCGGTTTTAGAATGAAATAACAGTTATATTTTTAAATTTACATTTGTGGTAAACTGATGGGCAGTGTGACCTTAAGCTATCAAATAAGTGGACCAAAGTTAAACTATTTCTGTTGTGCTGAACTGTTTCTATGGAAACAGGCTGATGTCCTTCCAGTTAATGCCACAGAGTGGGAATATTCCTCATAATGAGTGGAAGCTTTGAGAAGTATATTTCTGTTAACTTAAATGAATTATATTCTTATTATATAGTTGGGTACGAATGCATCTATTTTCATTGTGGTAAGGGTCTCTGTATCCTCTTCCCCAGGTCATGTCTTTCCTTAAATTCTTTGCATATTATAAAATCATACTTAAAACCATTAGAATACGTACATTTGTATTCTAATGCATGTTAAAAAGTTGAGTATGTAGGCAACACAAGGCTGCATGAGGGAAGTGCATTGTTACGTGCAGTTAATAGTTGGGGGCTGGCTTTATTTTGAACAACATTCTTGTCTATCCAGTGGCTACAAATGTTGTCCCCACAACAGAAACGGTGGTGGCAGAATTTCTAGAATGTTAAAAAACAAAAACAAAACAAAAAAAAAAAAACCACCCTGTGCCTTTTCAAAGCCAACAAAACTTCAGAAAAACACCTCTGGTTCTTTCAAAGTTTGTGTTTTAAAGTGCTCTGGTACTTGGTATTTTTTGCTAAAATGACAACTACCAATTCTTTTTCCTTTAAGTTACATTGAAATTTTTTCATTTAACGGCAGCTGAAGGGCCATTTTCAATTGGAAAAGTTCACTTCCATCTGTGGTAAACTTTATTTTGATGAGAAGTTGCACTAGTATTTTACCACCAGATGGAAAAAATATTAGGTGAGCATCATTTTTAAATTAATGTATTTAAAATAAAGTACAGAGGATATGTACATGTATATAATATATCAGGCTTTTGTTTTGAGTGGAATCTTTTCCCCCCAATTCTTAATGTAAAGATTTTGTGCTATAACTTTTAAAGCCATACAAATAAGAGTGCTAAACTGTGGACTTAAAAGTAGTTGTGTAAATATTTTTAATCAGTATTACTTGGAAAATAAAAATAACAACCACGTAAAATCAATATTGCTATTTTCTTTACCTGTTAAATACTGGGAGATAATTTACGTTTTAAAGTAAACTTTAAAATTATGTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000094870:ENSMUST00000177916:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=34.1),PF128742=zf-met=PU(12.5=6.8)
A:
NA
C2:
PF128742=zf-met=PD(79.2=8.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGCATGCCAAACTGGAG
R:
CCACTTGGACCTGAAGCAGTG
Band lengths:
342-2021
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types