RnoINT0167763 @ rn6
Intron Retention
Gene
ENSRNOG00000015925 | Zfp131
Description
zinc finger protein 131 [Source:RGD Symbol;Acc:1307638]
Coordinates
chr2:52504315-52507327:-
Coord C1 exon
chr2:52507197-52507327
Coord A exon
chr2:52505538-52507196
Coord C2 exon
chr2:52504315-52505537
Length
1659 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
ACTGTGTTTGGTGATTTCAGGTC
3' ss Score
7.83
Exon sequences
Seq C1 exon
GTGAAAAACCTTTTGAATGTTCAAATTGTCACGAGCGGTTTGCTAGAAATAGCACTCTCAAATGTCACCTCACTGCGTGCCAAACTGGAGTAGGGGCAAAAAAGGGAAGGAAGAAGCTTTATGAATGCCAG
Seq A exon
GTATGTGTGGGTATATTTTGTTTTCATAAGAGGAACTTACTACAGTCATTAGAAGTGCAGAGTATTGGATAATTAATAGTCCTTGACTCGTTGGGTTGACTGAGAAGATTTTGACATGACGTTAAAGCAAAAAACACTATGTGTTCATTGGAAACCATTCCTGGAATTTTGAAATCTGATCTTTTCTTGAATTGGTGAAACCCAGTAGGATCTTCTCTTGTGACTCTGGGCAGTAAGTAAGCAGCAAGCTTCAGCTCCTAGAGAAGCATGCACTCAAAATACTGGATAAAACCGATACTCTCATGCGCCCCAGAACAGCTATGAATATGGGCCAAAACAACCGAAATCCCTTAAACAGTAAGGGGCTTTGTTTTTTAACTTGTACAGCTCTTGCATGTAAACTTAGAAGATGACAATGTCCTCCTGTTGCAGTGTCAAAAGGTTGGGCATGCCTTTAGTTCCTATAGTGTGGGTAGGTTAGGGGGTCTCAAATGCTTTTTTGACACAACATCGCAGTGGTATATCAGCATCTCAGGAAAGCTAGAGCCTCAGAAAGACCGAAGTAAAGTTTTAATACAAGTTATTAGCAGCCCTAGATGATCAATATTGACAAAATTGTCAAGTTTGGTAGGTGGTTTTCTTTCTTTCTTTCTCCTCCTCCTCCTTCTTATTCTTTTTCTTTTTTCTTTTTTTTAATTTAAAAAGGCAATCTGTCCTATTCCAGGCCAGGCTGATTTTGTAGCTGAATTATGGTTACCTCCTGTCTCTCCTAAATGCGGAGGCCTGCACCCCACTCCTGGTTGGGGACAGTAGGTTGGGTGTTTGTTTATGTTTATTGACTAACAGCTGTGCTTTGTCATCAGAGGAGACTTTGTAGGAGTTTGTGCTGTTTTCACTGCGTGGATTTTAGGGATTGGGCTCAGAGATTGTCTCCCAACGTGGTGGCAAGTGCTGCCTTTACCTGTTGAGCCAGCTCACCTGCCCACAGTTAATTATTTTTACCCTTAGGAACAGTCATTAGCTTCTGGGAGAGGGGCAGGAAAGGCAGAAAAAGATAGAACTGTGTTTTCCATGATCAATAAATTTTTCTTCCAAATAGTGTAATGGGTCTAAATCTTGAAACTGTGGGATAAACTATGATATTGGCACTTTATATTGGATATTTAACAGGAGCAATGCTGGAGTGTTCCCAGGATTTAGTCAGTTTTAGGTGTATGGGCTGAAAGGTCAAGTGAAACCAAGTGTGTGAGTAGCTTTGCACTAGGTGCCCTGGGAACTATATTTAAAATGGTTCTGTAATAACTTACCTGTGTGGATGGTAGTGTTTTGTCATTGGTTGGTTTGTTTTCTGGTACTGGGAATTAAACACAGGGCCTCCCATATGCTGCGCAAGTACTTTCCCCACTAAGTTATGCGTTCACCATTCAACCCGTATTAGTGTATCTTTGTGAGGATTTCTTTGCTGTTGTTTTTTGTTTTATTTGGTTATTGTATTTGTTGACTGTTAGGATTAGAACCAGTATAGTGCCTTGTGATTGCTAGGCAGATACTACTGAACTAACTTCAACCCATTAGTGTATTTTATAGAGAATAAATGTACCCGCATTTACTTCAGTATGATTACAATTATCATTAACATACTGTGTTTGGTGATTTCAG
Seq C2 exon
GTCTGTAACAGTGTATTTAACAGCTGGGACCAGTTCAAAGATCACTTGGTAATACACACTGGAGATAAACCCAACCATTGTACTCTGTGTGACTTGTGGTTTATGCAAGGAAATGAATTAAGGAGGCATCTTAGTGATGCTCACAATATTTCAGAGCGTATAGTGACTGAAGAAGTCCTTTCAGTAGAAACACACTTACAAACGGAACCAGTGACATCAATGACTATTATAGAACAAGTTGGGAAAGTGCATGTGTTACCATTGCTTCAGGTCCAAGTGGATTCTGCACAAGTAACTGTGGAACAAGTTCATCCAGATCTGCTCCAAGACGGCCAAGTGCATGACTCACAAATGAGTGCGCTTCCAGAGCAGGTCCAGGTGAGTTACCTGGAGGTGGGTCGGATCCAGACTGAAGAAGGTACTGAAGTACACGTTGAAGAGCTTCACGTCGAACGGGTCAATCAGATGCCAGTGGAAGTACAAACTGAGCTTCTAGAAGCTGACTTGGATCACATGACCCCCGAAATGATGAGCCAAGAGGAGAGCGAACCTAACCATGCAGATGCTGCCATGGAAGAGTACGAAGACACTGAGGGCTTGGAGACCAAACCAGGAGAGCACTCCCACGCTGTAAAAGTGGACCACGACAGGACATCTATGCCCGTTTTAGAATGAAATAGCAGTGATATTTCTAAATTTACATTTGGGGTAAACTGATGGGCAGTGTGATCGTAAGCTATCAAATAAGTGGACCAAAGTTAAGCTATTTCTGTTGTGCTGAACTGTTTCTATGGAAACAGGCTGATGTCCTTCCAGTTAATGCCACAGAGTGGGAATATTCCTCATAATGAGTGGGAGCTTTGAGAAGTATATTTCTGGTAACTTAAATGAATTATATTCTTATTATATAGTTGGGTCCGAATGCATCTATTTTCATTGTGGTAAGGGTCTCCGTGTCCTCTTCCCCAGGTCATGTCTCTCCTTAAATTCTTTGCATATTATAAAATCATACTTAAAACCATTAGAATACATACATTTGTATTCTAATGCATGTTTAAAAATTGAGTATGTAGGCAACACAAGGCTGCATGAGGGAAGTGCATTGTTACTGTGCAGTTAATAGTTGGGGGCTAGCTTTAATTCGAACAACATTCTTGTCTAACTAGTGGCTACAAATGCTGTCCCCACAACAGAAACGGTGGTGGCAGAATTTCTAGAATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015925:ENSRNOT00000021608:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.496
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=34.1),PF128742=zf-met=PU(12.5=6.8)
A:
NA
C2:
PF128742=zf-met=PD(79.2=8.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGTCACCTCACTGCGTGC
R:
CACTTGGACCTGAAGCAATGGT
Band lengths:
351-2010
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]