HsaINT0186190 @ hg19
Intron Retention
Gene
ENSG00000172262 | ZNF131
Description
zinc finger protein 131 [Source:HGNC Symbol;Acc:12915]
Coordinates
chr5:43173420-43175823:+
Coord C1 exon
chr5:43173420-43173550
Coord A exon
chr5:43173551-43174548
Coord C2 exon
chr5:43174549-43175823
Length
998 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CATATTTTTGGTTATTTCAGGTC
3' ss Score
8.4
Exon sequences
Seq C1 exon
GTGAAAAACCTTTTGAATGTCCAAATTGTCATGAACGATTTGCTAGAAATAGCACTCTGAAATGTCACCTCACTGCATGCCAAACTGGAGTAGGGGCAAAAAAAGGAAGGAAGAAGCTCTACGAATGCCAG
Seq A exon
GTATGTGCAGATACATACATTCAGTTCTTAACAAAGGAGTCTTGTGTTTGCAGTCATCAAAAGCAAAGGGAAACAGAGTCTCAAGCAAAGGTATAGGGGCTGACGGTTTGGAAAGAAATGAGAATAAAGAACATTATTGTCTTGGGGACTAAATTAGTTTTTTTTAACCCAACCCTAGATGACACCAATGTCAATAACAACTATGTCCTAAATAACAGTCTGGAACTATAGTTAACCATGGAGTAATTATTAAAATTTGGGGTGGGGATTGGTGGAAGCATTTCAGCTGTAATTAGATTCCCCCCCCATGATTAGTGTATTTTTATATCAAATATCAAACAATTATTACATTATTTGATATAAAAATACAAAAATTACATTATTTGGTAAATGTTCTATGTTATGGGAGAAACTAAAATATTGTTATGTTTCTAGAATTTATATGATGCTTAAACAATGAAGGCAGTATTGAAATGTTTCTCAAAATGTATTTAGGTGGCCAGGCACGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATTGCCTGAGGTCAGGAGTTCAAGACCAGGCTGGCTAACGTGCTGAAACCCTGTCTCTACTAAAAATACAAAAGTTAGCCAGGCGTGGTGGCAGATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCCCTAGAACCCAGGAGACGGAGGTTGCAGTGAGCCGAGATCGCACCATTGCACTCCAGCCTGGGCAACAAGAGCGAGACTTTGTTTCAAACAAAAGAATGTATTTAGGTTACTAGCTGTGTCAGCTAGAAGTCCAAATGAACCAAAGAATTATGAAATAGCTTGGACGAGATTCTATTGCAGGTACCATATTTATAACATTTACAGAATAAGCCTTCAATCTTTTCTTTACAGAGAATAAATGCATTCATATTTCCTTCAGTTTGGATATAAGTATTGTCTACATCATATTTTTGGTTATTTCAG
Seq C2 exon
GTCTGCAACAGTGTGTTTAACAGCTGGGACCAGTTCAAAGATCACTTGGTAATACACACTGGAGATAAACCCAACCATTGTACTTTATGTGATTTGTGGTTTATGCAAGGAAATGAATTAAGGAGGCATCTCAGTGATGCTCACAATATTTCAGAGCGTCTAGTAACGGAAGAAGTTCTTTCAGTAGAAACACGTGTGCAAACTGAACCTGTAACATCAATGACTATTATAGAACAAGTTGGGAAGGTGCATGTGCTACCATTGCTTCAGGTTCAGGTGGATTCAGCACAAGTGACTGTGGAACAAGTCCATCCAGATCTGCTCCAGGACAGCCAGGTGCACGATTCACACATGAGTGAGCTTCCAGAGCAGGTCCAAGTGAGTTATCTAGAAGTGGGCCGAATTCAGACTGAAGAAGGTACTGAAGTACATGTAGAGGAGCTGCATGTTGAACGGGTCAATCAAATGCCAGTGGAAGTACAAACTGAACTTCTAGAAGCAGATTTGGACCACGTGACCCCAGAAATCATGAACCAAGAGGAGAGAGAGTCTAGCCAAGCAGATGCTGCTGAGGCTGCCAGGGAAGATCACGAAGATGCTGAGGATTTAGAGACCAAGCCAACAGTGGATTCTGAAGCAGAAAAGGCAGAGAATGAGGACAGAACAGCTCTGCCAGTTTTAGAATGAAATTACACATGAATATATTTTTAAATTTACTTGTTGGGTTTTTGAACTGATTATGGGCAGTTTGACTGTCCTTAATTAAGCCTAACAGACAAGTGGACCAAAGTTAAGCTGTTTCCTGTTGTGCTGAACTGTTGTCCGTTGAAACACATTGATTCCCCTCCCCCTACTTATTGCCACAGAGGAGGGATCTTTTCCATAACTGAAGGGGAGTTTTGAGAAGTATATTTCTGGAAACTTAAATGGATTATATTCTTATTATATAGTTGGGTACGAATGTATCTATTTTCATTGTGGTAAAAGTTCTTCCTTTTCTCTTTCCCAGGTCATGTTCTTCCTCAAATTTTTTCCATATTGTAAAATCAAACTTAAATCATTAGAATACAAGTTTATGTATTCTAATGCATGTTAGAAAATTGAATAATATAGGAAACACAAGGCTGCATGATGAAAAGTGCATTGTTACTGTGCAGTTAAATTTTGGCTTCTGGCTTTCTTTAGTTTGAACAAACGTTCTTGTCTACCCCAGTAGTCACAGATGCCATCTTTGCAACAGAAAGAGTGGTGGTGGCAAAATTTCTAGAATGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172262-ZNF131:NM_003432:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.518
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=34.1),PF128742=zf-met=PU(12.5=6.8)
A:
NA
C2:
PF128742=zf-met=PD(79.2=8.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGCATGCCAAACTGGAG
R:
TGTGCTGAATCCACCTGAACC
Band lengths:
352-1350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)