DreINT0181139 @ danRer10
Intron Retention
Gene
ENSDARG00000068400 | znf131
Description
zinc finger protein 131 [Source:ZFIN;Acc:ZDB-GENE-040426-1563]
Coordinates
chr8:31397505-31401665:-
Coord C1 exon
chr8:31401535-31401665
Coord A exon
chr8:31398104-31401534
Coord C2 exon
chr8:31397505-31398103
Length
3431 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
TCCATCTTTTTACTCCTCAGGTT
3' ss Score
10.34
Exon sequences
Seq C1 exon
GTGAGAAACCCTTTGAGTGTCCCGAGTGCCATGAACGTTTTGCAAGAAACAGTACGCTGAAGTGCCACATGTCAGCATGTCAAAATGGCTCTGGAGCCAAAAAAGGACGAAAGAAGCTCTATGAATGCCAG
Seq A exon
GTTAGTTTTTGTTCTCTAATATTCATTAAATATGGAAAATGCTTGCAATTTATTATCTTATTTGAATGGAAAATATTACACTATTACACAGTTAAAATATTTTTTTCGTTATTTAAACAACAAGACTCAAGACTGCTGTTTTTTCTCAATTCAATGCTATGTGTTGCATTTTTTGTTTTGTTTGTTAAAATGCATTTTATGGAAGATTGTGGTACTTGAGTCTATTAAGAAATTAAGTAATTAAGAATTAAGAAGAGTAATTAAGAAAAACTTATTAAATTAAAAAAAAAAGTTTAAGGCCAAAATTTCAACCAGTATTATATGGTAATAATTACTAAATGGCAATACAAAACATACTCCTTTATTTTTTAGTTTTGTAAAACAATGAGGATTTAAGAAAAAAAAAAACATTTGACAATACAGCTATACAATTACAATAATAGTTTTTTATTTGTTTATTTAAAGTTACATTTTTTTTGCAAACAATGGGGTATATGCACATGGACTTTTAATTTTTCAATCAGCCAGTCCAAGTGCTTCTAGTAAACTATGGAACTTCCAGTCTTTTTGTTACATTTAAAAAAAAATAAAAAATCGGCTATCTTCACTGCCTGATAGATATATGATATAAAAATGGTCTCAGACTGGACAAGAAGCACGACATTAAACTTTCCCTACTGTGTCTTTTAAAATATGCAAATATTTTTCCCCAGTATTTTCAATGGAGTTTTTGCGCTAGCCTGCTGCTACTGATGGCACTAGTGCTTGCTCGTTTTTTGCTTAATCAAGTAATTGGATGTTAAGTTGATTTAACTGACTGTATTATAATTACATTACAACATCAGTGCTGTAAAAGGAAACTTGTAGACTATTTTGAGGGATGTAAACAAAAACAATAGTCCCAACATATTTCCTGTTTTACATTTTTAGTTTCTGAGAATACAAAGCGAGTCACATATTGAAAATTAATGTTATGACTGCTGTATTAACATTAAGTTATGATTAAACAGCTTCTTGTTACTGTTATGAAATAGTTTGATAACAAACAGTAAATGTTCATGGAAACACCAAGAGCAGTGTCTTAAGAATTATACATGATGCAGATTTACCTCTTAATAACAAATTAAATGCAAATTACAGTCTTGAGAAAACAGCAGCTTTTAAAAAAGTCCTTATGTAATTAAGATGACCTCAGAGTCATCTTCACTCTTCTTTATCTTTTTACTCACGGAAATCTGGCCTTGATGAAGTAAACAGAACAAATGAATGTAGATTACAATAGCCGCGTTTCCACTGTCGGGCCAGTGCGAGCCATGGCTTTTATCGGGCAGGGACGGGTCAATCGCCCGGGAGGTTGAGCAGTGAGGCCGAAATCATGTCACGTTTCCACTGTCGGGCTAGTAGCTCGCAGCGCATCACGCAAACCCCGCCTCCAGAGCGTCCCCTAAATCAAACTTCACACAACCCGCCCACTTCAGAGAGAATCAGGCAGATAAAGCACACCATTGCATCATCACGAAATCATTAAAATGAAGACAATCGAAAAAAACAAATGACATGTTACTGTACAGCAGGACATGATTTGTCTATACGCATGGGCCTGTGTGTTTTTATTCATTATATTCATTTACTCACCAACCCATTGTTGGCATCGAAAATCAAAGGGTCTTGCCAGCACAGGGAGCGCACCATACATAATATAACACCACAGAAATTCTCCGTTCATAACTCGTCAGAAAATGTATAGACGCTGTCAAACATTTTGTTTTGCTCAGCAGCTTTTCTCTAATAAATCTCTTCATGTAAATTTTATTTTTAAATTTTACCACGTTATTTATAATTATGAACACTTGTTTGAGGACACAGAACAAATTTTGTATTTGCAGTTTTCCTTGTAAAGCGGCGGTGCACAGGACAGAAAAAAAGGTAGCCTAGTTTCTGCTTTCACTCACCCAAAAAATGCTCTGTTTGCACGATTTGATTAATATCATCATATCCCAATACTTTATAAATAATATTTAAACCTTCTCCAGTGTTTGTTGTTTTTTTTTTTTTAGAAAATATCTAATCTTTTTTCAGAGAGGCCTTTGTAAAATGAAAGTTTAATATGGCTTTAAAACGGTTTGATTTATGTATTGTATATTGTATTGTATATTGTAAATGTTTGGCACATATACTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCCCACCTGGCCCTCTTTGGCCCAAGGTTTTCGGTGGGCCAAAAAAGGCTGGCTGCTGGCCCCGAGAAAGACCCGATTAGGCCCCGTAAGTGACGCTGGAATCGTGACTGGCCTTGGCTCGCTCTATTTAGGCGCGTTATGGGAAATGCGGCTAATGTCAAACGAAGGCGAAGCCTCAGATCCACAGCTGTTACATCATTACCACATGCCAGGGGTAGTTCAAATGGTAGTTTTCCATTCAAAAGAATTAAAAGGTTGCTTTTGTGTGTTCTTTTAAACTCCTTAAACAACCTCCAAATGAATATCGTTTTGGTCAAAATAACAACACACCCGTTCGTTATTTGATATCTTACTTGCATGTGGCATGGTTGTTGGTGGCAGATTGGCTTGTCTGAGTATTTCAGAAACTGCTGATCTACAGGGATTTTCCCTCACAACCATCTCTAGGGTTTACTGAGAATGGTTTGAAAAAGGGAAAATATCCAGTGAGTGGCAGTTTTGTGGGCACAAATGCCCTGTTGAGGCCAGAGGTCAGAGAATGGCCAGACTGTTTCAAGCTGATAGAAAGGCAACAGTAACTCAAATAATCGCTTATTACCGCTGAGGTGTGCAGAAGAGCATCTCTGAGTGCACAACACGCTGAACCTTGAGGTGGATGGCCTACAGCAGCGAAATACCATGCTGGGTGCCAGTCCTGTCATATAAGAACAAGAAACTTGGGCTACATTTTGTACGGGGTCACCAAAATTGGACAATAGATGATTGAAAAAACGTTGCCTGGTCTGGTGAGTCTTAATTTCTGCAGCAACTGCTTGATGCTGTCATGCCAATATGGACCAAAATCCCTGAGAAATATTCTAGTATCTTGTTTAATCTATGCCAAGAAGTAATAAAGCAGTTCTGAAGGCAAAGGCCGTCTAATCCGGTACTAGTAAGGTGTACCTAATAAACTGACCAGTGAGTGTATTTGGACTTCTCAATAAATCGTGAGGTGCCAGTAATCTTTGCTGAACTTAAATTATGAACGGTTGTTTTCCCTTTGCATGTTTTCAGCTTTATTTTGTTCAATAATCCATCTTTTTACTCCTCAG
Seq C2 exon
GTTTGTAGCAGTGTTTTTAATAGTTGGGAGCAGTTCAAGGATCATTTGGTGACCCACACGGGTGAGAAACCCAACCACTGCACCCTCTGCGACCTGTGGTTCACATCACCCAGAGACCTCCACACTCACCTGCAGGAGCACCACAGCTTACAGGAGAAGGTAATCGTGGCAGAGGACATCTTGATTTCAGACCCTGCTAATGTCTTGTCTATGGAGGAGGGCGAGGAGCGGGTGATTCTGGAGGATGGTATACGGGTGGAGCACGTCACTGTGGAACCGGTGGACGTTGTAGCTGTTGAGGAGACTCTCGTGGTGGAGGAAGAGACGCAGATACAGCCCTCTCAACCCGAGGGTGGAGTAGCAGAGACAGTGGTTTTACAGGTAGACAGTGAAAAATTGAAAGAACAGGTGATGGGGATTCAAGTCGAACGGGAGACTGTTGCAGAACCAGCAGAAGCCAAACAAGAGCCTGCTAGCTGTGAAAAGACCGAGAATGTATGAAAGGCTGTACTTGGACGCTATAAGAATGAATTGAGGAGGCTTTTTCTCCTTTTCCACCCTTTTAAAATGATACAATAAAGCTCATTGTGGAGTTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068400:ENSDART00000098912:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.331
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=34.1),PF128742=zf-met=PU(12.5=6.8)
A:
NA
C2:
PF128742=zf-met=PD(79.2=11.4),PF139091=zf-H2C2_5=WD(100=15.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]