BtaINT0164913 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015504 | ZNF131
Description
Bos taurus zinc finger protein 131 (ZNF131), mRNA. [Source:RefSeq mRNA;Acc:NM_001101218]
Coordinates
chr20:31576800-31578258:+
Coord C1 exon
chr20:31576800-31576930
Coord A exon
chr20:31576931-31577571
Coord C2 exon
chr20:31577572-31578258
Length
641 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
TAACTATTTGGTTGTTTCAGGTC
3' ss Score
9.16
Exon sequences
Seq C1 exon
GTGAAAAACCTTTTGAATGTCCAAATTGTCATGAACGATTTGCTAGAAATAGTACCCTCAAATGTCACTTGACTGCATGCCAGACTGGAGTGGGAGCAAAAAAGGGGAGAAAGAAGCTTTATGAATGTCAG
Seq A exon
GTACGTGTGGATGTGGTGTACTGTATTCTGAGCAAAGAAGTCTATGTTTGAAATTGTTAGAAGTGACAAGTAACAAGCCTAGACCAAAAGTATGGCGCTGACAGTTCAGAAAGAGATTAAAGAACATAATTGTCTTGCTTTTATAAGGGAAACTGTTGTTTTTACCCAATCCTAGATGATACCAATGTTATTAACATTATGTCCTAAGTAACAAGTAGTGTCAAACTATGGTTATTCTTAACCATAGAGCAGTCATTGGGATTCTGGAGTGGTGAAAGAGGCAGACCAGCTGTAATGGGCTCTTCTTCCTTGGTTAGTGTTTTTATTCCAAATGGTGAGATTGTTCTTAATGTTGATATTATATAAGAAAGTATAATAGTGTTACTTTTATATTCCTAGAATTTATGACATTTAAACAATGAAGGAAATATTAAAACGTGTCCCAAAAAGGATTTACGTTTTTAGCTACAACAGCTAAAAGGTCAAATAAACAAAAGATTTATGAACTCCCTTAGACTATATTACAGATGTTATATTTATGACATATTCAGAAAAATCTGCAACTTTTTCCTTACACAGATTAAATGCATCCTGTATTTCTTTGAGTTTGAATGTAAGTGTTAACTATTTGGTTGTTTCAG
Seq C2 exon
GTCTGTAATAGTGTGTTTAACAGCTGGGACCAGTTCAAAGATCACCTGGTGATACACACTGGAGATAAACCCAACCATTGTACTCTGTGTGACTTGTGGTTTATGCAAGGAAATGAATTAAGGAGGCATCTCAGTGATACTCATAATATTTCAGAGCGCCTGGTAACTGAAGAAGTTCTTTCAGTAGAAACACGTGTGCAAACTGAACCTGTGACGTCAATGACTATTATAGAACAAGTTGGGAAGGTACATGTGTTACCACTGCTCCAGGTTCAGGTGGATTCAGCACAAGTGACTGTAGAACAGGTCCATCCAGATCTGCTCCAAGACAGCCAAGTGCACGAGTCACACGTGAGTGAGCTTCCAGAGCAGGTCCAGGTAAGTTATCTAGAAGTGGGGCGAATTCAGACTGAAGAAGGTACTGAAGTCCATGTAGAGGAGCTGCATGTTGAACGGGTAAATCAGATGCCAGTGGAAGTACAAACTGAGCTTCTAGAAGCAGACTTGGAGCAAGTGACCCCTGAAATCATGAACCAAGAGGAGAGAGAGCCTACCCAAGCAGATGCTGCCGAGGCTGCTATAGAAGAACACGAAGATGCTGAGGATTTAGAGACCAAATCAACAGTGGATTCCCAAGCTGAAAAGGCAGGAAATGAGAACAGAACACCTATGCCAGTTTTAGAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015504:ENSBTAT00000038149:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.509
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=34.1),PF128742=zf-met=PU(12.5=6.8)
A:
NA
C2:
PF128742=zf-met=PD(79.2=8.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGACTGCATGCCAGACTG
R:
GCTGAATCCACCTGAACCTGG
Band lengths:
352-993
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]