GgaINT1030480 @ galGal4
Intron Retention
Gene
ENSGALG00000014859 | ZNF131
Description
zinc finger protein 131 [Source:HGNC Symbol;Acc:HGNC:12915]
Coordinates
chrZ:13483595-13485439:+
Coord C1 exon
chrZ:13483595-13483725
Coord A exon
chrZ:13483726-13484776
Coord C2 exon
chrZ:13484777-13485439
Length
1051 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CACTGTGTCTTTTGTTTCAGGTT
3' ss Score
12.34
Exon sequences
Seq C1 exon
GTGAAAAACCATTTGAATGTCCAAACTGCCACGAACGTTTCGCTAGGAATAGCACACTCAAATGTCACTTGACAGCATGTCAGTCTGGTGCTGGAGCTAAAAAGGGAAGGAAGAAGCTGTATGAATGTCAG
Seq A exon
GTGAGTAATGAGGGTTGCAGAGTATGAGGCTGGACACCTCCAACCTGTATTGGGATTGTGGGTATACTAAGCAGGGAAGGCAACGGGAGTAGGCTTGTGTCAACAAGGACTGCTTTTATTACAATTAATACAAGAATCGCATTCAACCATGACATGCAGATAAATTCTATATCTAGATAGTCCCATTTAAAATGCAGCATTATTGATGTGAGGTTTCATAATATTTTCTTATTATTTCTGCAGCCTTTTCAGAGTTCTTGATGCACTAAACTAGCCCTTTCCTGCTTGTGTGCATGCTTCACTGAAGTCCAAAATACAAAGTACAATCTAATTTCCTATTTTATTATTCTTCTGTTTGATACTCATTATGTTGACTTTATCCGTAAAGTCATTCTATCTTATGATGACAATCCATAATATCTTTTAAGCCAATATAGATTTTGTAGATAGATGTACTCATTTCTGCTGTGTCTTTTTGTATCGTTCTCAGGCTACTCATCTCTGTGCCAGCTGAAGGGAAGGAATTGTGCTCAAAATAATGTGTCTGTGGTCTAGGCAGTATTTCTAGCTGGGCAGGACTAACATGGATTTAGTTTTAAGAGATCTTCATCAACAGAGATGTTTTTTTGAAATGACAGAATGTGAGAGTTTAACCTAGCTAGTTAAATGTCACAGTGCTGTGATCAGAATCAGCTAGAAGTCCTGCATGTAGAACTTCACTAACAGGAATTTCTGCCCACAATTCTAGCACCAGACACTTAGTGGGACATGCTTCTTTATCTGAATTTCACATAGAGTTGAAATAAGCGGAATTCCAAGTCCCGTACTGACTGATAAATTTGGTAGCACCTGGAAGTGACACAATTTTTCTTAATAACAGCTACTCTGTTGATCTGAAGGTAACTTCTCAGCTTTTACCTTGGACATGTGTTGGCTTTTTTTAAATCTATGTCTCAAGAAGCTACATTGTGTAAAGCCTGGGCTGAAGTAGGCATTATACTTTGGCATATTTCTGTTGGCACGGTTATACTCACTGTGTCTTTTGTTTCAG
Seq C2 exon
GTTTGTAACAGCGTGTTTAACAGCTGGGATCAGTTTAAAGATCACTTGGTAATCCACACTGGCGACAAGCCCAACCACTGTACTTTATGTGATTTGTGGTTTATGCAAGGCAGTGAGCTGAGAAGGCATCTAAAAGACACACATAATATTTCAGAACGACTAGTGACAGAAGAGGTTCTCCCAGTGGAAGCTGTGGAAGGTGAACCAGTAACATCAATGACCATAATAGAACAAGTGGAGCAAGTTCATGTCCTACCAGTAATTCAGGTACAAGTAGATCCTGCACAGGTAACTGTGGAACAGATGCACCAGGATCTCATACAGGACAATCAAGTGAAAGGCACACAGATGGATGAACTGCAAGAACAGGTGCAAATTAGTTACCTGGAAGTGGAGCACATTCAAACTGAGCAAGGTGCTGAAGTTCACGTGGAGCAGTTGCATGTTGAGCATGTTAATCAAATACAGATGGAAGAAGTACAGGCAGAACTTATAGATGGCACTGACCTTGAACAAGTAGAATATGAGAGTGTTGACCAAGGAGATCCAGGAGAGAAGGAACCTAGTTGCGTAGATGATGCAGGTAAGGAAGTTCATGAACAGGCTGAAGACTTAAAAACTCAACAGTTAGTGGATATAAAGAATCAAAAGGTGGACAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014859:ENSGALT00000023979:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.332
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=34.1),PF128742=zf-met=PU(12.5=6.8)
A:
NA
C2:
PF128742=zf-met=PD(79.2=8.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCTGGAGCTAAAAAGGG
R:
CTGGTGCATCTGTTCCACAGT
Band lengths:
358-1409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]